View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_high_11 (Length: 416)
Name: NF6819A_high_11
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Complemental strand, 32912927 - 32912537
Alignment:
| Q |
3 |
gctagattattcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaa |
102 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912927 |
gctatatttttcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaa |
32912828 |
T |
|
| Q |
103 |
ttttgaaattaggtgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaatagcatcaaatttataaaa |
202 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912827 |
ttttgaaattaggtgtctttggatcaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaatagcatcaaatttataaaa |
32912728 |
T |
|
| Q |
203 |
gaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912727 |
gaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattc |
32912628 |
T |
|
| Q |
303 |
caccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagttagccccaga |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32912627 |
caccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaaattagccccaga |
32912537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 32924892 - 32924530
Alignment:
| Q |
19 |
caagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaatta---gg |
115 |
Q |
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|||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| || | |||||||||||||||| | ||| | || || |
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| T |
32924892 |
caagaagtggataagttgatttggcctcctcaagatttaatgtacaagctttcttagcttcagtctcaagatccacaggacgaagtgtgagactataagg |
32924793 |
T |
|
| Q |
116 |
tgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaat-----taaatagcatcaaatttata---aaagaaa- |
206 |
Q |
| |
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||| ||||| | ||||| ||||| |||||||||||| ||||||||||||| |||||||||| | || | |||||| | || ||| ||| |
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| T |
32924792 |
tgtatttgggtcaaccaaaccaatctaaaataataa----acaatgtaattagaaaggcttaatgttaatgaacactatcaaaataattgggaaataaat |
32924697 |
T |
|
| Q |
207 |
--acaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattcca |
304 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| |||| ||||| ||| ||||||||||| |
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| T |
32924696 |
taacaataataa--tacatacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattcca |
32924599 |
T |
|
| Q |
305 |
ccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
373 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |
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|
| T |
32924598 |
ccaaaagtgcaattctgatagggacatggataattcaatttaagagcctcacgaactatctttttgcat |
32924530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 32935684 - 32935523
Alignment:
| Q |
223 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
322 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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| T |
32935684 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
32935585 |
T |
|
| Q |
323 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagtt |
384 |
Q |
| |
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||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |||||||||| |
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| T |
32935584 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagtt |
32935523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 32935889 - 32935764
Alignment:
| Q |
26 |
tggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtctttgga |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| ||| | ||| ||| | || |||||||| | ||||| |
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| T |
32935889 |
tggataagtggatttgacatcctcaaagtttaatgcacaagctcgtttagcttcaatttcgaaatctattggatgaagtatggaattaggtttatttggc |
32935790 |
T |
|
| Q |
126 |
ttaaccataccaacctaaaataataa |
151 |
Q |
| |
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| |||||||||||||||||| ||||| |
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| T |
32935789 |
tcaaccataccaacctaaaaaaataa |
32935764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 32927366 - 32927261
Alignment:
| Q |
279 |
ttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccatt |
378 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||| ||||||| ||| |
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| T |
32927366 |
ttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatc |
32927267 |
T |
|
| Q |
379 |
aaagtt |
384 |
Q |
| |
|
|||||| |
|
|
| T |
32927266 |
aaagtt |
32927261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 32950302 - 32950186
Alignment:
| Q |
268 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
367 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || ||| ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32950302 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctct |
32950203 |
T |
|
| Q |
368 |
ttgcatccattaaagtt |
384 |
Q |
| |
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|||||| ||| |||||| |
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| T |
32950202 |
ttgcattcatcaaagtt |
32950186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 32943121 - 32943005
Alignment:
| Q |
268 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
367 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || || ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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|
| T |
32943121 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct |
32943022 |
T |
|
| Q |
368 |
ttgcatccattaaagtt |
384 |
Q |
| |
|
|||||| ||| |||||| |
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| T |
32943021 |
ttgcattcatcaaagtt |
32943005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 32927706 - 32927656
Alignment:
| Q |
30 |
taagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttca |
80 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||| |||||||||| |
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|
| T |
32927706 |
taagtgtatttgacatcctcaaagtttaatgtacaagctcgcttagcttca |
32927656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 3 - 373
Target Start/End: Complemental strand, 11825229 - 11824871
Alignment:
| Q |
3 |
gctagattattcttagcaagaaatggataagtggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaa |
102 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
11825229 |
gctatatttttcttagcaagaaatggataactggatttggcatcctcaaaatttaatgcacaagctttcttagcttcactctcgaaatccacaggtcgaa |
11825130 |
T |
|
| Q |
103 |
ttttgaaattaggtgtctttggattaaccataccaacctaaaataataatttgacaatgtaattagcaaggcttaattaaatagcatcaaattta-taaa |
201 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||| | |||| |
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|
| T |
11825129 |
ttttgaaattaggtttatttggatcaaccataccaacctaaaataataa----acaatgtaattagaaaggcttaat-------gataaaattaattaaa |
11825041 |
T |
|
| Q |
202 |
agaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaatt |
301 |
Q |
| |
|
| |||||||| | | ||||||| ||| ||| ||||||||||||| |||||| ||||||||| | | |||||||| |||| ||||| |||||||||||| |
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|
| T |
11825040 |
atgaaacaatatt--aatacatacttctgcagctaggtaaaagaaaaatgaagcagcaaaaagttttctctgtccacttcctcctccaccattccaaatt |
11824943 |
T |
|
| Q |
302 |
ccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
373 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
11824942 |
ccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcat |
11824871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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