View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_high_12 (Length: 410)

Name: NF6819A_high_12
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_high_12
NF6819A_high_12
[»] chr1 (18 HSPs)
chr1 (8-249)||(3544594-3544836)
chr1 (10-410)||(1248081-1248481)
chr1 (8-148)||(28358396-28358537)
chr1 (133-410)||(34352667-34352944)
chr1 (8-410)||(5808825-5809228)
chr1 (12-150)||(19014481-19014619)
chr1 (8-326)||(13867326-13867645)
chr1 (8-149)||(52691976-52692118)
chr1 (37-325)||(45795535-45795824)
chr1 (10-158)||(40563053-40563202)
chr1 (271-366)||(26510129-26510224)
chr1 (8-91)||(27393442-27393525)
chr1 (44-128)||(3074271-3074356)
chr1 (83-150)||(28097534-28097601)
chr1 (8-54)||(32352803-32352849)
chr1 (44-128)||(22191311-22191396)
chr1 (8-101)||(38070386-38070479)
chr1 (8-101)||(45795829-45795922)
[»] chr6 (18 HSPs)
chr6 (8-249)||(14843630-14843872)
chr6 (8-410)||(14686501-14686904)
chr6 (8-149)||(19350449-19350591)
chr6 (8-152)||(32186185-32186330)
chr6 (12-149)||(29976505-29976650)
chr6 (20-200)||(25350676-25350857)
chr6 (11-143)||(7956167-7956299)
chr6 (8-92)||(10919957-10920041)
chr6 (9-152)||(26514226-26514370)
chr6 (39-123)||(10362664-10362749)
chr6 (8-149)||(13086044-13086186)
chr6 (8-92)||(34434823-34434907)
chr6 (8-95)||(18588909-18588996)
chr6 (39-92)||(900385-900438)
chr6 (8-101)||(1104440-1104533)
chr6 (377-410)||(5085889-5085922)
chr6 (44-128)||(29056045-29056130)
chr6 (377-409)||(17111002-17111034)
[»] chr5 (16 HSPs)
chr5 (8-249)||(476618-476860)
chr5 (8-193)||(380362-380548)
chr5 (8-150)||(42259784-42259927)
chr5 (65-150)||(22176376-22176462)
chr5 (31-150)||(42039221-42039341)
chr5 (39-103)||(4297833-4297897)
chr5 (377-410)||(11574557-11574590)
chr5 (32-101)||(15862194-15862263)
chr5 (20-61)||(22437810-22437851)
chr5 (44-101)||(41590650-41590707)
chr5 (41-101)||(29572398-29572458)
chr5 (41-101)||(29573775-29573835)
chr5 (41-101)||(29575152-29575212)
chr5 (41-101)||(29576529-29576589)
chr5 (41-101)||(29577906-29577966)
chr5 (41-101)||(29579283-29579343)
[»] scaffold0043 (1 HSPs)
scaffold0043 (9-249)||(34103-34344)
[»] chr3 (16 HSPs)
chr3 (8-249)||(31675336-31675578)
chr3 (8-249)||(31920844-31921086)
chr3 (8-149)||(19875748-19875890)
chr3 (216-410)||(34829663-34829857)
chr3 (8-101)||(25024337-25024430)
chr3 (8-149)||(53941808-53941950)
chr3 (8-149)||(55367115-55367257)
chr3 (8-150)||(40513217-40513360)
chr3 (8-101)||(48930280-48930373)
chr3 (39-123)||(52250648-52250733)
chr3 (8-150)||(34829904-34830040)
chr3 (8-149)||(14307713-14307855)
chr3 (8-149)||(18381564-18381705)
chr3 (8-65)||(42807259-42807316)
chr3 (47-128)||(31547897-31547980)
chr3 (11-146)||(46190000-46190136)
[»] chr7 (19 HSPs)
chr7 (248-410)||(26855957-26856119)
chr7 (8-149)||(27218615-27218757)
chr7 (8-146)||(19544895-19545034)
chr7 (20-193)||(20349425-20349598)
chr7 (8-150)||(17504052-17504195)
chr7 (8-150)||(17549019-17549162)
chr7 (20-146)||(34103985-34104112)
chr7 (8-101)||(11341350-11341443)
chr7 (44-92)||(8752925-8752973)
chr7 (44-101)||(25018847-25018904)
chr7 (39-80)||(41805282-41805323)
chr7 (20-92)||(23054476-23054548)
chr7 (8-150)||(23887588-23887730)
chr7 (8-150)||(23898764-23898906)
chr7 (21-91)||(20918524-20918594)
chr7 (44-128)||(17056055-17056140)
chr7 (46-99)||(39658919-39658972)
chr7 (40-92)||(12308647-12308699)
chr7 (377-409)||(27941357-27941389)
[»] chr2 (6 HSPs)
chr2 (8-410)||(11196595-11196998)
chr2 (8-149)||(6823916-6824058)
chr2 (39-122)||(10689087-10689170)
chr2 (39-123)||(43310790-43310875)
chr2 (39-101)||(26146769-26146831)
chr2 (21-101)||(7301227-7301307)
[»] chr4 (16 HSPs)
chr4 (8-325)||(43516241-43516559)
chr4 (44-305)||(2071889-2072151)
chr4 (8-149)||(9690927-9691069)
chr4 (342-410)||(20544328-20544396)
chr4 (57-146)||(52617407-52617497)
chr4 (33-150)||(7098986-7099104)
chr4 (8-146)||(56336993-56337132)
chr4 (39-101)||(38296260-38296322)
chr4 (44-146)||(36183045-36183148)
chr4 (8-182)||(55725199-55725374)
chr4 (8-54)||(3129482-3129528)
chr4 (8-54)||(23872969-23873015)
chr4 (377-410)||(8935319-8935352)
chr4 (377-410)||(23657639-23657672)
chr4 (39-96)||(29328301-29328358)
chr4 (377-410)||(29553603-29553636)
[»] scaffold0189 (1 HSPs)
scaffold0189 (11-149)||(6593-6732)
[»] chr8 (12 HSPs)
chr8 (20-152)||(25193590-25193723)
chr8 (8-146)||(15439632-15439764)
chr8 (8-146)||(15530936-15531068)
chr8 (10-262)||(6245483-6245727)
chr8 (44-157)||(29721439-29721553)
chr8 (8-149)||(36025026-36025168)
chr8 (8-92)||(18187709-18187793)
chr8 (11-146)||(37165617-37165753)
chr8 (42-92)||(12332411-12332461)
chr8 (8-149)||(12341072-12341214)
chr8 (39-101)||(36492935-36492997)
chr8 (261-410)||(9511026-9511175)
[»] scaffold0048 (1 HSPs)
scaffold0048 (8-92)||(63792-63876)
[»] scaffold0131 (1 HSPs)
scaffold0131 (8-54)||(4049-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-54)||(134347-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (8-54)||(312174-312220)
scaffold0002 (8-54)||(327628-327674)
[»] scaffold0026 (1 HSPs)
scaffold0026 (41-101)||(67634-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (39-101)||(55216-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (39-101)||(143356-143418)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 3544594 - 3544836
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3544594 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 3544693  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544694 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 3544793  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3544794 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 3544836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 410
Target Start/End: Original strand, 1248081 - 1248481
Alignment:
Q  10 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagta 109  Q
    ||||||| | || ||||| |||| || |||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1248081 gtgttggtgtatattggtggataaaggtggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtaggggctggagta 1248180  T
Q  110 cttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatgg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| |||||    
T  1248181 cttcatcttggtggagggaagtagtgaagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatgg 1248280  T
Q  210 cgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagcact 309  Q
    | || |||||||||||||||||||||||||||||||||||   ||| || | || || ||| ||||||| ||||| |||||  ||||||| ||||| ||     
T  1248281 cttggctacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgactaataagttgagtacg 1248380  T
Q  310 gtggctgatatggttgtctttggtggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgta 409  Q
    ||||| |||||  ||||| ||||| |||||  ||  |||| |  ||||  ||||||| ||||  || |||  ||||||||||||||||||||||||||||    
T  1248381 gtggcagatatttttgtccttggttgggagaatggaggaggggcgtggaattggaggagacctttgtgggtatgggaggaggagctgttagaggagtgta 1248480  T
Q  410 g 410  Q
    |    
T  1248481 g 1248481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 28358537 - 28358396
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||| || |||||||||||||||  || |||||||| |||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  28358537 tggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 28358438  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatg 148  Q
    ||   ||||||||||||| |||||||| ||||||||||||||    
T  28358437 gtgtctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 410
Target Start/End: Complemental strand, 34352944 - 34352667
Alignment:
Q  133 gtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatg 232  Q
    |||||||||||||||||| | || || |  |||||| |||||||||| ||| |||| |||| || ||||||  || ||     ||||| |||||| ||||    
T  34352944 gtgaagattagggatggggtaggcgatgtagaggggggttggtttgcagagagggtgtcgaaaaaggtaggagattgcactagtactttcttttgatatg 34352845  T
Q  233 acaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttgtctttgg 332  Q
    |||||||||||||||||   ||||||||||  || || |||||  | ||||| ||||| ||||||||  ||||||| || ||| ||||||||| | ||||    
T  34352844 acaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatggttgcccttgg 34352745  T
Q  333 tggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgtag 410  Q
    |||||||||||||||||||  |||||| ||||||||   | || ||| ||||||||||||| || |||||||||||||    
T  34352744 tggggaggttgacggagaggcgtggggctggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtag 34352667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 5809228 - 5808825
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    ||||||||||| |||||||| || | || |||  | ||||||||||| || |||||| | ||||||| | |||  |||||||||||||| |||| |||||    
T  5809228 tggtgttggcggatgttggtggacaaaggtgggctctggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccgga 5809129  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||  |||||||| |||| |||||||||||||||||||||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||| ||       
T  5809128 gtgtttcatcttagtggcaggaagtagtgaagattagggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtgggggg 5809029  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagc 306  Q
    |||| |   ||| | ||||||||||||||||||||||||||||   |||||||||||||| | ||||||||| || || ||| | ||||||||| || |     
T  5809028 tggcattagtacattcttttggtatgacaggtggcttggtgatgttcctttttgtactaggtatcgtcgtttattggacttaacgtctaataaactgtgt 5808929  T
Q  307 actgtggctgatatggttgtctttggtggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagt 406  Q
    ||  | ||| ||||| |||    ||||||||| ||||  |||||   ||||||||||||| ||  | || ||| ||| ||||||||| ||||| ||||||    
T  5808928 acgatagctaatatgtttgatcctggtggggaagttggtggagaagcgtggggttggaggagaaggttgggggtgtgcgaggaggagatgttaaaggagt 5808829  T
Q  407 gtag 410  Q
    ||||    
T  5808828 gtag 5808825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 19014481 - 19014619
Alignment:
Q  12 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagtact 111  Q
    ||||||| |||||||| || |||| ||| |||||||||   ||| |||| |||||||||||||||||| |||||||||||||||| |||||||||||  |    
T  19014481 gttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggttggggccggagtgtt 19014580  T
Q  112 tcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    || |||||||||| |||  ||||||||||||||||||||    
T  19014581 tcttcttggtggagggagatagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 13867326 - 13867645
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggcc-gga 106  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||| | |||    
T  13867326 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 13867425  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||  |||||| ||||||    || |||  ||||||||||||||| | || || |  |||||| | |||||||| ||| |||| ||||  |  |||||  |    
T  13867426 gtgtttcatcgtggtggcgaaaaatagcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggaga 13867525  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagc 306  Q
    |||      ||||||||||||||||||||||||||||||||||   ||||||||||  || || |||||| | ||| ||||||  |||||||| ||||||    
T  13867526 tggttctagtacttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagc 13867625  T
Q  307 actgtggctgatatggttgt 326  Q
    || || ||||||||||||||    
T  13867626 acggtagctgatatggttgt 13867645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 52692118 - 52691976
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtag-gggccgga 106  Q
    ||||||||| | |||||||| |||||||| || || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||| ||| ||||    
T  52692118 tggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcgga 52692019  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  ||| |||||||||| |||  ||| |||||||| ||||||    
T  52692018 gtgattcttcttggtggagggagatagcgaagattaaggatgg 52691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 325
Target Start/End: Complemental strand, 45795824 - 45795535
Alignment:
Q  37 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggcc-ggagtacttcatcttggtggaaggaagtagtg 135  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| |||| | |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  136 aagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgaca 235  Q
    ||||||||||||||| | || || |  |||||| | |||||||  ||  |||| ||||  |  |||||  |||||     ||||||||||||||||||||    
T  45795724 aagattagggatggggtaggcgatgtagaggggggctggtttgtagatagggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgaca 45795625  T
Q  236 ggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttg 325  Q
    ||||||| ||||||   ||||||||||  || || |||||| | ||| ||||||  |||||||| |||||||| || |||||||||||||    
T  45795624 ggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttg 45795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 40563053 - 40563202
Alignment:
Q  10 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagt 108  Q
    ||||||| | |||||||| |||||||| || || |||||||| ||  |||| ||||||||||| || ||||||| ||||||||||| | ||||||||| |    
T  40563053 gtgttggaggatgttggtggatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggccggact 40563152  T
Q  109 acttcatcttggtggaaggaagtagtgaagattagggatgggatgggtga 158  Q
      ||||||||||||||  ||  ||| |||||||||||||||  |||||||    
T  40563153 gtttcatcttggtggagagagatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 26510129 - 26510224
Alignment:
Q  271 cgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgacggagagctgtggggttggagg 366  Q
    ||||| || |||||| |||| ||||||||| | || || ||||||||| ||||||   |||||||| ||||||||||||||  |||||||||||||    
T  26510129 cgtcggttatttgatctagcgtctaataaactaagtacggtggctgatttggttgctcttggtgggaaggttgacggagaggcgtggggttggagg 26510224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 27393442 - 27393525
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 91  Q
    ||||||||| |  ||||||| |||||||  ||||| ||||||| |||| |||| || || ||||||||||||||||||||||||    
T  27393442 tggtgttggaggttgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccggagtacttcatcttggtggaagga 128  Q
    |||||||||||| |||||||| | |||||||||||||  |||||||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 28097534 - 28097601
Alignment:
Q  83 gggaggttggaggtaggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    |||||||||||||| |||||||||||  ||| |||||||||| ||| || | || |||||||||||||    
T  28097534 gggaggttggaggttggggccggagttattcttcttggtggagggaggtggcgaggattagggatggg 28097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 32352803 - 32352849
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  32352803 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 32352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 22191311 - 22191396
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaagga 128  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| || | |||||||||||  ||| || |||||||||||    
T  22191311 tggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 22191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 38070479 - 38070386
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||||||  ||||||| |||||||  || || |||||||| ||  |||| || || |||||||||||||| ||| |||||||||| ||||    
T  38070479 tggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggg 38070386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 45795922 - 45795829
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||||| |||||||| |||| || |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| ||||    
T  45795922 tggtgttggcggatgttggtggataaaggtggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggg 45795829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 14843630 - 14843872
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggc-cgga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||    
T  14843630 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacgga 14843729  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843730 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 14843829  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14843830 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 14843872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 14686501 - 14686904
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    ||||||||||| |||||||| |||||||  || |||||||||||||| ||||||||| | ||||| |||  ||  ||| ||||||||||||||| |||||    
T  14686501 tggtgttggcggatgttggtggatagaggcggattttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccgga 14686600  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacg-atgaggggagttggtttgcggagcgggtttcgagaagggtaggta 205  Q
    ||  ||||||||||||||  ||||||| |||||||||||||||  | ||||| | | |||||| |||||||||| ||| || | || | || | | ||      
T  14686601 gtgtttcatcttggtggagagaagtagcgaagattagggatggtgtaggtgaggtaggagggg-gttggtttgcagagaggttgtcaaaaaagatggggg 14686699  T
Q  206 atggcgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgag 305  Q
    | ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14686700 acggaactagcacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgag 14686799  T
Q  306 cactgtggctgatatggttgtctttggtggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggag 405  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||||||| ||| || ||||||||||||| |||||||||||||||    
T  14686800 cactgtggctgatatggttgactttggtggggagggtgacggagagatgtgggtctggaggcgtccgttgagggcgtgggaggatgagctgttagaggag 14686899  T
Q  406 tgtag 410  Q
    |||||    
T  14686900 tgtag 14686904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 19350591 - 19350449
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  19350591 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 19350492  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  19350491 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 32186330 - 32186185
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||   ||||||| ||||||| ||| ||||||||||||||| |||| ||||||||| |||||| ||| ||||||||||||| | |||||||||    
T  32186330 tggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccgga 32186231  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggat 152  Q
    || |||| |||||||||| ||| |||||||||||||||||||||||    
T  32186230 gtgcttcttcttggtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 29976505 - 29976650
Alignment:
Q  12 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg--------taggggcc 103  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||        | ||||||    
T  29976505 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgggggcc 29976604  T
Q  104 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    |||||   ||||||||||||||||| |||| |||||||||||||||    
T  29976605 ggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 25350857 - 25350676
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggta-ggggccggagtacttcatctt 118  Q
    |||||||| ||||||||||| || |||||||||||| |||| ||| | |||||||||||||| |||||||||| |||| |||||||||||  ||| | ||    
T  25350857 atgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattcttttt 25350758  T
Q  119 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggt 200  Q
    ||| || |||  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| ||||||    
T  25350757 ggttgagggagatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggt 25350676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 7956167 - 7956299
Alignment:
Q  11 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagtac 110  Q
    |||||||| ||||| || |||||||||||| |||||||| | ||| |||| || ||||||||||||||||  |||||||||||||  | |||||||||      
T  7956167 tgttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggaggatgaggccggagtgg 7956266  T
Q  111 ttcatcttggtggaaggaagtagtgaagattag 143  Q
    ||| |  ||||||||| | || |||||||||||    
T  7956267 ttctttatggtggaagaaggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 10919957 - 10920041
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||| | |||||||| |||||||  || ||||||||||||||| |||| || || |||||||||||||| ||||||||||    
T  10919957 tggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 26514370 - 26514226
Alignment:
Q  9 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggag 107  Q
    |||||||| | ||| |||| |||||||| || || |||||||| ||| |||| ||  | |||||||||||||||||||| ||||||| | ||||||||||    
T  26514370 ggtgttggaggatgctggtggatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggag 26514271  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattagggatgggat 152  Q
    |  |||   |||||||| |||  ||| ||||||||||||||||||    
T  26514270 tggttctatttggtggagggagatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt-aggggccggagtacttcatcttggtgg 123  Q
    |||| |||||||||||  |||| |||||||||||||||||||  ||||||||||||||  |||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 13086186 - 13086044
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||| | ||||||||||||||||  ||||| |||||||| || || || ||  | ||||| ||||  | |||||||||||||| | |||||||||    
T  13086186 tggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgga 13086087  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  ||| | |||||||||||| |||| || |||||| |||||    
T  13086086 gttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 34434907 - 34434823
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||||| ||||||||||| ||   | || | |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  34434907 tggtgttggcggatgttggtagagaggagtagtatatggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18588996 - 18588909
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg 95  Q
    |||||||||||  |||| || |||||||| || || |||||| | ||| |||| || ||||||||||||||||  |||||||||||||    
T  18588996 tggtgttggcgtttgttagttgatagagacgggttatggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg 18588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 900385 - 900438
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||||||||||| |||  || || || ||||||||||||||||||||||    
T  900385 gtttttggtatagggtgttggctgctaggtacggtgaggaggcagggaggttgg 900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 1104440 - 1104533
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||| |  |||| ||| |||||  |||||| |||||||||||| |||| ||  | |||||||||||||||| |||||||| ||| ||||    
T  1104440 tggtgttggagtttgttagtaaatagatgtggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtggttgggg 1104533  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 5085889 - 5085922
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||||||||||||||||| ||||||||||||||||    
T  5085889 gggcgtgggaggaggagatgttagaggagtgtag 5085922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 29056130 - 29056045
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaagga 128  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| || | |||||||||||  ||| || |||||||||||    
T  29056130 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaagga 29056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 17111002 - 17111034
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgta 409  Q
    |||||||||||||||||||| ||||||||||||    
T  17111002 gggcgtgggaggaggagctggtagaggagtgta 17111034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 476860 - 476618
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  476860 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 476761  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  476760 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 476661  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  476660 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 476618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 380548 - 380362
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||| | |||||||||    
T  380548 tggtgttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccgga 380449  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 193  Q
    ||  ||| ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380448 gtggttcttcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 42259927 - 42259784
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggg-gccgga 106  Q
    |||||||| || |||||||| ||||||| ||| |||||||||| |||| | || | ||||||| |||||| ||| ||||| |||||||| ||| ||||||    
T  42259927 tggtgttgacggatgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccgga 42259828  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    || |||| |||||||||| ||| |||||||||||||||||||||    
T  42259827 gtgcttcttcttggtggagggaggtagtgaagattagggatggg 42259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  65 agatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    |||||||||||||||||||||||||||| || | |||||||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 42039221 - 42039341
Alignment:
Q  31 tagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaa 129  Q
    ||||| ||| ||||||||||||||| |||| |||| ||||||||||| ||  ||| ||||||||| | ||||||||||| |||  |||||||||| |||     
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  130 gtagtgaagattagggatggg 150  Q
     || |||||||||||||||||    
T  42039321 ttaatgaagattagggatggg 42039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 4297833 - 4297897
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggcc 103  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcc 4297897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 11574557 - 11574590
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||||||||||||||||| ||||||||||||||||    
T  11574557 gggcgtgggaggaggagatgttagaggagtgtag 11574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 15862194 - 15862263
Alignment:
Q  32 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| ||||||||||||||| || | || || |||||||| ||||| ||| |||||||||| ||||    
T  15862194 agagatgggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttgggg 15862263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 22437851 - 22437810
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggta 61  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  22437851 atgttagtagatagagatggtttgtggtatagggtgttggta 22437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 41590707 - 41590650
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| ||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggg 41590650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29572398 - 29572458
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29572398 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29572458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29573775 - 29573835
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29573775 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29575152 - 29575212
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29575152 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29575212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29576529 - 29576589
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29576529 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29577906 - 29577966
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29577906 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29577966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29579283 - 29579343
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| ||||    
T  29579283 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggg 29579343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 34103 - 34344
Alignment:
Q  9 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccggag 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34103 ggtgttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggag 34202  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34203 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaat 34302  T
Q  208 ggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34303 ggcgtgtctacttacttttggtatgacaggtggcttggtgat 34344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 31675578 - 31675336
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  31675578 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31675479  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | |||||||||    
T  31675478 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaa 31675379  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  31675378 tggcgcgtctacttacttttggtatgataggtggcttggtgat 31675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 31920844 - 31921086
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  31920844 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31920943  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | |||||||||    
T  31920944 gtacttcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaa 31921043  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgat 249  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  31921044 tggcgcgtctacttacttttggtatgataggtggcttggtgat 31921086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 19875890 - 19875748
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| | |||||||||    
T  19875890 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccgga 19875791  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||   ||||||||||||||||| |||| |||||||| ||||||    
T  19875790 gtgtatcatcttggtggaaggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 410
Target Start/End: Complemental strand, 34829857 - 34829663
Alignment:
Q  216 tacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagcactgtggct 315  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||||||| |||||||| || |||||| |||  ||||||||| | || || ||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct 34829758  T
Q  316 gatatggttgtctttggtggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||  ||||||   ||||||||||||||||| ||||| |||||||||||||| ||  | || ||  ||||||||||||| || |||||||||||||    
T  34829757 gacttggttgctcttggtggggaggttgacagagaggtgtggggttggaggagaaggttgaggctgtgggaggaggagatgctagaggagtgtag 34829663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 25024337 - 25024430
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||| | ||||| || ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  25024337 tggtgttggaggatgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggg 25024430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 53941950 - 53941808
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggta-ggggccgga 106  Q
    ||||||||| | |||||||| |||||||| || || ||||||| |||| |||| ||| | |||||||||||||| |||||||||| |||| |||||||||    
T  53941950 tggtgttggaggatgttggtggatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccgga 53941851  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  ||| | || ||||| |||  ||| |||||||||||||||    
T  53941850 gtgattctttttagtggagggagatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 55367257 - 55367115
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggta-ggggccgga 106  Q
    ||||||||| | ||||| || ||||||| ||| || ||||||| |||  || |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  55367257 tggtgttggaggatgttagttgatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccgga 55367158  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  ||| | |||||||| |||  ||  ||||||||| |||||    
T  55367157 gtgattccttttggtggatggagataacgaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 40513217 - 40513360
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| ||||||||| | ||||| |||    
T  40513217 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 40513316  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    ||  |||| | ||||||  |||| |||  |||||||||||||||    
T  40513317 gtgtttcaccgtggtggcgggaattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 48930373 - 48930280
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||||||  |||||||||| ||  || |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| ||||    
T  48930373 tggtgttggcggctgttggtagagaggaatagtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggg 48930280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtgg 123  Q
    |||| |||||||||||| |||| |||||||||||||||||||  ||||||||||||| | |||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 34830040 - 34829904
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggag 107  Q
    ||||||||||| |||||||| |||| || ||| || ||||||||||| |||| |||| ||||||||||| | |  |||||||||      ||| ||||||    
T  34830040 tggtgttggcggatgttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaaagatgggaggttg------gggcccggag 34829947  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    |  |||||||||||||   ||||||| ||||||||||||||||    
T  34829946 tgtttcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 14307855 - 14307713
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggag-gtaggggccgga 106  Q
    ||||||||| ||||||| || |||||||  || || |||| ||| ||  |||  |||||||||||||||||||||||||| ||||||  | |||||||||    
T  14307855 tggtgttggagaatgttcgtggatagagcggggttctggtgtagagtattggcggcgagatatggtgaggaggcagggagattggagtttgggggccgga 14307756  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307755 gtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 18381705 - 18381564
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggag 107  Q
    ||||||||| |||||||||| |||||||  || || |||||| ||||  |||| |||||||||||||| ||||  || |||||||| ||||||| |||||    
T  18381705 tggtgttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatgtagggggcggag 18381606  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    |  |||   |||||||| |||  ||| || ||||||||||||    
T  18381605 tgtttctatttggtggagggagatagcgaggattagggatgg 18381564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 42807316 - 42807259
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcga 65  Q
    ||||||||||| |||||||||||||| ||| |||| |||| ||||||| |||| ||||    
T  42807316 tggtgttggcggatgttggtagatagggatagtttatggtttagggtgttggtggcga 42807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 31547980 - 31547897
Alignment:
Q  47 tatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt--aggggccggagtacttcatcttggtggaagga 128  Q
    ||||||||| |||||||| | |||||||||||||  |||||||||| |||   |||||||||||  ||| || |||||||||||    
T  31547980 tatagggtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaagga 31547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 46190136 - 46190000
Alignment:
Q  11 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagta 109  Q
    ||||||||  ||||||| |||| ||  ||||| ||||| |||||  |||| ||||| |||||||||||||| | | ||||||||| | |||||||||||     
T  46190136 tgttggcggttgttggtggataaaggaggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtg 46190037  T
Q  110 cttcatcttggtggaaggaagtagtgaagattaggga 146  Q
     |||   ||| |||| ||| |||| ||||||||||||    
T  46190036 tttctaattgatggagggaggtagcgaagattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 248 - 410
Target Start/End: Complemental strand, 26856119 - 26855957
Alignment:
Q  248 atacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgacgg 347  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26856119 atacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctaatatggttgtctttggtggggagggtgacgg 26856020  T
Q  348 agagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgtag 410  Q
    |||| ||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  26856019 agagatgtggggctggaggcgtccgttgagggcgtgggaggaggagctgttagaggagtgtag 26855957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 27218615 - 27218757
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  27218615 tggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccgga 27218714  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  27218715 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 19544895 - 19545034
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||   |  |||||||||||||||||| ||||||||||| | |||||||||    
T  19544895 tggtgttggcggatgttggtggatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccgga 19544994  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattaggga 146  Q
    ||  ||| |  |||||||||||  ||||||||||||||||    
T  19544995 gtggttctttgtggtggaaggatctagtgaagattaggga 19545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 20349598 - 20349425
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagtacttcatcttg 119  Q
    |||||||||||||||||  | || |||||||||||| |||| ||  | ||||||||||||||||||||||||||||||||||| |||||  |||   |||    
T  20349598 atgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtaggggcaggagtggttctctttg 20349499  T
Q  120 gtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 193  Q
    ||||| |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| ||||    
T  20349498 gtggagggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcga 20349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 17504052 - 17504195
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  ||||||||||||| | |||||||||    
T  17504052 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17504151  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17504152 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 17549162 - 17549019
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  ||||||||||||| | |||||||||    
T  17549162 tggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccgga 17549063  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    ||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17549062 gtggttctttgtggtggaaggaggttatgaagattagagatggg 17549019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 34104112 - 34103985
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatctt 118  Q
    |||||| | |||| ||| || ||||||||||||||| |||| ||| | || |||||||||||| |||||||||||| | ||||| |||||  ||| | ||    
T  34104112 atgttgatggataaagaggggttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgtt 34104013  T
Q  119 ggtggaaggaagtagtgaagattaggga 146  Q
    ||||||||||  ||||||||||||||||    
T  34104012 ggtggaaggatttagtgaagattaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 11341443 - 11341350
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||| | ||||||||  ||||| | || ||||||||||||||| |||  || || ||||||||||||||||||||||||||||| ||||    
T  11341443 tggtgttggaggatgttggtttatagatagggattttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggg 11341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 25018847 - 25018904
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggg 25018904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggagg 80  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 23054476 - 23054548
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||| || |||||||  || ||||||||||||||| |||  || ||| ||||||||||||||||||||||||    
T  23054476 atgttagttgatagaggagggttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 23887730 - 23887588
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggc-cgga 106  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||  ||||    
T  23887730 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23887632  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23887631 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 23898906 - 23898764
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggc-cgga 106  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||  ||||    
T  23898906 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23898808  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 150  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23898807 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 20918594 - 20918524
Alignment:
Q  21 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 91  Q
    |||| ||||||||||  ||||| |||||||||||||| ||| |  | ||||||||| ||||||||||||||    
T  20918594 tgttagtagatagaggaggtttgtggtatagggtgctagtaactcgttatggtgagaaggcagggaggttg 20918524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 17056140 - 17056055
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaagga 128  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| || | |||||||||||  ||| || |||||||||||    
T  17056140 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 17056055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 39658919 - 39658972
Alignment:
Q  46 gtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagg 99  Q
    |||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||    
T  39658919 gtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgggggtagg 39658972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 12308647 - 12308699
Alignment:
Q  40 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    |||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  12308647 tttttggtatagggtgttggctgcaaggtatggtgaggaggcatggaggttgg 12308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 27941357 - 27941389
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgta 409  Q
    ||||||||||||||||| |||||||||||||||    
T  27941357 gggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 11196998 - 11196595
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    ||||||||||||||| |||| |||||||  || || ||||||||||| ||||||||| | |||||||||   |  ||| |||||||||| |||| |||||    
T  11196998 tggtgttggcgaatgatggtggatagaggcgggttatggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccgga 11196899  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||  |||||||||||||  ||||||||  ||||||||||||||| | || || |  |||||  ||||||||||  || |||| |||| || ||||||  |    
T  11196898 gtgtttcatcttggtggcgggaagtagctaagattagggatggggtaggcgatgtagagggtggttggtttgcacagagggtatcgaaaaaggtagggga 11196799  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagc 306  Q
    ||||     ||||| ||||| | |||| ||||||||||||||||| ||||||||||| || || ||| |||| ||||| ||||| ||||||||| ||||     
T  11196798 tggcactagtactttctttttgcatgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagt 11196699  T
Q  307 actgtggctgatatggttgtctttggtggggaggttgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagt 406  Q
    || ||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||  | || ||| ||||||||||||| || |||||||||    
T  11196698 acggtggctgatatggttgctattggtggggaggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagt 11196599  T
Q  407 gtag 410  Q
    ||||    
T  11196598 gtag 11196595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 6824058 - 6823916
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||| |||||||||| |||||||  || || |||||||||||  |||  |||||||||| ||||||||||||||||||||||| | |||||||||    
T  6824058 tggtgttggagaatgttggtggatagagcggggttctggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccgga 6823959  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  |||| | ||||||||||| |||| |||||||||||||||    
T  6823958 gtgtttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagtacttcatcttggtg 122  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  ||||||||||||| |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggttggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtgg 123  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  ||||||||||||| | |||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 26146831 - 26146769
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggg 26146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 7301307 - 7301227
Alignment:
Q  21 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||| ||||||| ||| |||| |||||||||| |||| | ||| || ||| ||||| ||| |||||||||||| ||||    
T  7301307 tgttggtggatagaggtgggttttagtatagggtgttggtggtgaggtacggtaaggagacagagaggttggaggttgggg 7301227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 43516241 - 43516559
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||||  |||||||  ||||||| |||||| ||||||||||| || |||| | | |||||||||  ||| ||| ||||||||| | ||||| |||    
T  43516241 tggtgttggcagatgttggcggatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcagga 43516340  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 206  Q
    ||  |||||||||||||  |||||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  |||||  |    
T  43516341 gtgtttcatcttggtggcgggaagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggaga 43516440  T
Q  207 tggcgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgagc 306  Q
    ||||     |||||||||||||||||||| |||||||||||||   ||||||||||  || || |||||| | ||| ||||||  |||||||| ||||||    
T  43516441 tggctctagtacttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagc 43516540  T
Q  307 actgtggctgatatggttg 325  Q
    || || |||||||||||||    
T  43516541 acggtagctgatatggttg 43516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 305
Target Start/End: Complemental strand, 2072151 - 2071889
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagatta 142  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||| | |||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  143 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggct 242  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||  |   |||||||||||||| |||||||||| |    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtgggt 2071952  T
Q  243 tggtgatacacctttttgtactagatttcgtcgtttgtttgatttagcatctaataaattgag 305  Q
    ||||||| | |||||  |||   | |||| |||||| ||||||||| || |||| ||||||||    
T  2071951 tggtgatgcccctttacgtaagcgttttcctcgtttatttgatttatcaactaacaaattgag 2071889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 9691069 - 9690927
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||| |  ||||||| ||||||  ||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| | |||||||||    
T  9691069 tggtgttggaggttgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccgga 9690970  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  |||   |||||||| |||  ||| |||||||||||||||    
T  9690969 gtgtttctcattggtggagggagatagcgaagattagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 20544396 - 20544328
Alignment:
Q  342 tgacggagagctgtggggttggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgtag 410  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  20544396 tgacggagagatgtggggttggaggcgacggctgagggcgtgggaggaggagatgttagaggagtgtag 20544328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  57 tggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 146  Q
    |||| |||||||||||||||||||||| ||||||||||| ||| |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 7099104 - 7098986
Alignment:
Q  33 gagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaagt 131  Q
    |||| ||||| |||||| ||||  || |||| ||||||||||||||||  | ||||||||||| | |||||||||||  |||   |||||||||||| ||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  132 agtgaagattagggatggg 150  Q
     ||||||||||||||||||    
T  7099004 tgtgaagattagggatggg 7098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 56336993 - 56337132
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    |||||||| ||  ||||||| |||||||  ||||| ||||||||||| || |  ||||| |||||||||||||| ||| ||||||||| | |||| ||||    
T  56336993 tggtgttgtcggttgttggtggatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggtcgga 56337092  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattaggga 146  Q
    ||  |||  ||||||||| |||  ||| ||||||||||||    
T  56337093 gtgtttctacttggtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 38296322 - 38296260
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||||||||||| |||| |||||||||||||||| |   |||||||||||||| ||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgaggtgaatgggaggttggaggttgggg 38296260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagatta 142  Q
    ||||||||||| || || || ||||||||||||||||  ||| ||||||||| | |||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  143 ggga 146  Q
    ||||    
T  36183048 ggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 55725199 - 55725374
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccgga 106  Q
    ||||||||| |  |||| |||||||||||||| || |||||||||||| |||| || || ||||||| |||||  ||  | ||||||| | |||||||||    
T  55725199 tggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccgga 55725298  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 182  Q
    ||  ||| |||||||||| |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725299 gttgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 3129482 - 3129528
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  3129482 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 3129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 23872969 - 23873015
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||||||||||| |||||| |||||| ||||    
T  23872969 tggtgttggcggatgttggtagatagaggtggtttgtggtatcgggt 23873015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 8935352 - 8935319
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||||||||||||||||| ||||||||||||||||    
T  8935352 gggcgtgggaggaggagatgttagaggagtgtag 8935319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 23657672 - 23657639
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||||||||||||||||| ||||||||||||||||    
T  23657672 gggcgtgggaggaggagttgttagaggagtgtag 23657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 29328301 - 29328358
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt 96  Q
    |||||||||||| |||  |||| ||||| |||||||||||||  ||||||||||||||    
T  29328301 gtttttggtataaggtcttggtcgcgaggtatggtgaggaggtggggaggttggaggt 29328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 29553603 - 29553636
Alignment:
Q  377 gggcgtgggaggaggagctgttagaggagtgtag 410  Q
    ||||||||||||||||| ||||||||||||||||    
T  29553603 gggcgtgggaggaggagttgttagaggagtgtag 29553636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 6732 - 6593
Alignment:
Q  11 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagta 109  Q
    |||||| | |||||||||||  |||  ||||| |||||||||||  | || |||||||||||||||||||||||||||||||||| | ||||| |||||     
T  6732 tgttggaggatgttggtagagcgaggcggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtg 6633  T
Q  110 cttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||||||| |||||||  || |||| |||||||||||||||    
T  6632 cttcatcatggtggagagaggtagcgaagattagggatgg 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 25193723 - 25193590
Alignment:
Q  20 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggta-ggggccggagtacttcatctt 118  Q
    |||||||| ||||||||||| || |||||| ||||| |||| | | | |||||||||||||| ||||||||||||||| |||||||||||  ||| | ||    
T  25193723 atgttggtggatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttatt 25193624  T
Q  119 ggtggaaggaagtagtgaagattagggatgggat 152  Q
    |||||| |||  ||| ||||||||||||||||||    
T  25193623 ggtggagggagatagcgaagattagggatgggat 25193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 15439764 - 15439632
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggag 107  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   ||||||||||||||||||||||||      ||||||||||    
T  15439764 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggttg------ggggccggag 15439671  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattaggga 146  Q
       ||| | ||||||||||||||||||||||||||||||    
T  15439670 cggttctttttggtggaaggaagtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 15531068 - 15530936
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggag 107  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   ||||||||||||||||||||||||      ||||||||||    
T  15531068 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggttg------ggggccggag 15530975  T
Q  108 tacttcatcttggtggaaggaagtagtgaagattaggga 146  Q
       ||| | ||||||||||||||||||||||||||||||    
T  15530974 cggttctttttggtggaaggaagtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 6245727 - 6245483
Alignment:
Q  10 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggccggagta 109  Q
    ||||||||| |||||||| ||||||| |||  | ||||||||||| || |||||  | ||||||||| |||| ||||||||||      ||||||||||     
T  6245727 gtgttggcggatgttggtggatagaggtgggctctggtatagggttcttgtagcatgttatggtgagaaggctgggaggttgg------gggccggagtg 6245634  T
Q  110 cttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatgg 209  Q
     |||||||||||||  ||||||||||||||||||||||||| | ||||| |  || ||| |||||||  || || |||| |||| || ||| ||  ||||    
T  6245633 tttcatcttggtggcgggaagtagtgaagattagggatggggtaggtgatgcagatgggggttggtt--cgcagagggtgtcgaaaaaggtgggggatgg 6245536  T
Q  210 cgtgtctacttacttttggtatgacaggtggcttggtgatacacctttttgta 262  Q
    |     ||||| |||||||||||| |||||||||||||||   ||||||||||    
T  6245535 cactagtactttcttttggtatgataggtggcttggtgatgttcctttttgta 6245483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  44 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggta-ggggccggagtacttcatcttggtggaaggaagtagtgaagatta 142  Q
    |||||||||||  |||| |||||||||||||||||| | ||||||||||||||| |||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  143 gggatgggatgggtg 157  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 36025168 - 36025026
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg-ccgga 106  Q
    ||||||||||| |||||||| |||||||  || || |||||||| ||  |||| |||||||||||||||||||| ||| |||||||||| |||| |||||    
T  36025168 tggtgttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccgga 36025069  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  |||  ||| |||||  ||  ||| |||||||||||||||    
T  36025068 gtgtttccactttgtggagagagttagcgaagattagggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 18187793 - 18187709
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||| || |||| |||||||||| |||||| |||||||||| |||||| |   ||||||||||||||| |||| ||||||    
T  18187793 tggtgttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttgg 18187709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 37165617 - 37165753
Alignment:
Q  11 tgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-taggggccggagta 109  Q
    |||||| | ||||| || |||||||  || || ||||||||||| ||||| ||||||||||| |||||||  ||| ||||||||| | |||||||||||     
T  37165617 tgttggaggatgttagtggatagaggaggcttgtggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtg 37165716  T
Q  110 cttcatcttggtggaaggaagtagtgaagattaggga 146  Q
     |||  ||||||||| |||  ||| ||||||||||||    
T  37165717 tttctacttggtggagggagatagcgaagattaggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 12332461 - 12332411
Alignment:
Q  42 tttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    |||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 12341214 - 12341072
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggg-gccgga 106  Q
    ||||||||| | ||||| || |||||||  || || |||| |||||| ||||| ||||| |||||||||||||| ||| |||||||||| ||| ||||||    
T  12341214 tggtgttggaggatgttagtggatagaggagggttgtggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccgga 12341115  T
Q  107 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 149  Q
    ||  |||   |||||||| | |  ||| |||||||||||||||    
T  12341114 gtgtttctaattggtggaggtagatagcgaagattagggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 36492997 - 36492935
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| ||||    
T  36492997 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggg 36492935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 410
Target Start/End: Complemental strand, 9511175 - 9511026
Alignment:
Q  261 tactagatttcgtcgtttgtttgatttagcatctaataaattgagcactgtggctgatatggttgtctttggtggggaggttgacggagagctgtggggt 360  Q
    |||||| || |||||||| |||||||||   ||||||||| || | || || ||||||||| |||    || |||||| ||||  |||||   |||||||    
T  9511175 tactaggttccgtcgtttatttgatttaatgtctaataaactgtgtacagtagctgatatgtttgatcctgctggggaagttggtggagaagcgtggggt 9511076  T
Q  361 tggaggcgaccgctgcgggcgtgggaggaggagctgttagaggagtgtag 410  Q
    |||||| ||  | || ||| ||||||||||||| ||||||||||||||||    
T  9511075 tggaggagaaggttgagggtgtgggaggaggagatgttagaggagtgtag 9511026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 63792 - 63876
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 92  Q
    ||||||||||| |||||| | || | ||||  |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  63792 tggtgttggcggatgttgatggacaaagataatttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 4049 - 4095
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  4049 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 134347 - 134393
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  134347 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 312174 - 312220
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  312174 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 327628 - 327674
Alignment:
Q  8 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 54  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  327628 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 67694 - 67634
Alignment:
Q  41 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    ||||||||||||||| || |  | || ||||||||||||||||||||||||||||| ||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggg 67634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 55278 - 55216
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||    
T  55278 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggg 55216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 143356 - 143418
Alignment:
Q  39 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggg 101  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||    
T  143356 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggg 143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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