View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_high_13 (Length: 398)

Name: NF6819A_high_13
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_high_13
NF6819A_high_13
[»] chr4 (40 HSPs)
chr4 (7-389)||(18048418-18048813)
chr4 (12-105)||(18935611-18935707)
chr4 (12-108)||(2520598-2520698)
chr4 (12-71)||(4142942-4143002)
chr4 (142-221)||(23132771-23132850)
chr4 (142-216)||(29406383-29406458)
chr4 (12-66)||(32766380-32766435)
chr4 (12-109)||(47320589-47320690)
chr4 (31-108)||(22300666-22300746)
chr4 (141-228)||(43627218-43627306)
chr4 (6-96)||(22038981-22039074)
chr4 (9-66)||(56040830-56040889)
chr4 (12-108)||(22611005-22611104)
chr4 (35-73)||(45418385-45418423)
chr4 (31-68)||(26091121-26091158)
chr4 (142-221)||(6170933-6171013)
chr4 (15-71)||(10496203-10496259)
chr4 (12-71)||(19853700-19853759)
chr4 (12-71)||(22558653-22558713)
chr4 (142-221)||(25224498-25224578)
chr4 (145-216)||(40486470-40486542)
chr4 (12-105)||(42032715-42032812)
chr4 (12-71)||(53810889-53810949)
chr4 (142-216)||(2629605-2629680)
chr4 (142-216)||(11294807-11294882)
chr4 (12-62)||(22063968-22064019)
chr4 (167-228)||(28715741-28715804)
chr4 (15-108)||(35348127-35348224)
chr4 (12-66)||(43510065-43510120)
chr4 (31-109)||(51888424-51888505)
chr4 (142-216)||(51890823-51890898)
chr4 (18-108)||(9643198-9643293)
chr4 (31-108)||(26633878-26633958)
chr4 (32-66)||(36161580-36161614)
chr4 (167-216)||(51777895-51777945)
chr4 (152-216)||(38848089-38848154)
chr4 (32-108)||(48257658-48257737)
chr4 (37-70)||(55227857-55227890)
chr4 (12-66)||(24099258-24099314)
chr4 (145-216)||(42081764-42081836)
[»] chr3 (44 HSPs)
chr3 (7-389)||(4396513-4396908)
chr3 (18-105)||(29239143-29239232)
chr3 (7-105)||(21290002-21290104)
chr3 (12-71)||(10232911-10232971)
chr3 (15-108)||(50194474-50194571)
chr3 (142-227)||(9685022-9685108)
chr3 (141-218)||(46817318-46817396)
chr3 (12-105)||(51303827-51303923)
chr3 (12-71)||(6954884-6954944)
chr3 (142-216)||(4227713-4227788)
chr3 (12-108)||(9998267-9998368)
chr3 (142-216)||(26880203-26880278)
chr3 (142-227)||(46844929-46845015)
chr3 (18-105)||(7546414-7546505)
chr3 (18-66)||(9797724-9797773)
chr3 (12-68)||(36461619-36461676)
chr3 (31-71)||(40556552-40556592)
chr3 (16-71)||(54148829-54148885)
chr3 (142-216)||(19222555-19222630)
chr3 (142-216)||(24303416-24303491)
chr3 (16-66)||(33579714-33579765)
chr3 (142-216)||(49443392-49443467)
chr3 (12-108)||(12050836-12050936)
chr3 (35-108)||(32701299-32701375)
chr3 (29-97)||(35175209-35175281)
chr3 (142-227)||(38949700-38949786)
chr3 (188-226)||(49284895-49284933)
chr3 (7-107)||(629087-629193)
chr3 (18-105)||(8914508-8914599)
chr3 (12-71)||(10108079-10108137)
chr3 (12-105)||(29921856-29921954)
chr3 (12-105)||(29971009-29971107)
chr3 (189-226)||(36729523-36729560)
chr3 (171-227)||(39709094-39709151)
chr3 (142-214)||(43280094-43280167)
chr3 (17-108)||(47895952-47896047)
chr3 (141-216)||(5173979-5174055)
chr3 (31-71)||(12149990-12150030)
chr3 (35-108)||(31272018-31272095)
chr3 (167-217)||(32732504-32732556)
chr3 (31-107)||(43016657-43016738)
chr3 (12-71)||(47042240-47042300)
chr3 (31-71)||(48650943-48650983)
chr3 (189-221)||(54288100-54288132)
[»] chr8 (18 HSPs)
chr8 (12-108)||(37971098-37971195)
chr8 (12-109)||(1239589-1239690)
chr8 (12-108)||(8981000-8981100)
chr8 (12-109)||(1236879-1236980)
chr8 (12-108)||(15344109-15344209)
chr8 (12-108)||(15433174-15433274)
chr8 (12-108)||(15524478-15524578)
chr8 (12-108)||(31013757-31013857)
chr8 (31-104)||(7677486-7677562)
chr8 (182-228)||(41458362-41458408)
chr8 (142-216)||(550327-550402)
chr8 (14-66)||(8826056-8826110)
chr8 (142-216)||(12770394-12770469)
chr8 (142-216)||(41272120-41272195)
chr8 (31-108)||(20553451-20553531)
chr8 (167-221)||(8183371-8183427)
chr8 (32-68)||(14545110-14545146)
chr8 (15-62)||(25191255-25191303)
[»] chr7 (26 HSPs)
chr7 (12-109)||(30757007-30757108)
chr7 (7-105)||(1749325-1749426)
chr7 (7-96)||(11343615-11343707)
chr7 (12-108)||(34899795-34899892)
chr7 (167-227)||(40200768-40200829)
chr7 (12-71)||(19296721-19296781)
chr7 (12-105)||(35132757-35132854)
chr7 (15-71)||(37837649-37837706)
chr7 (19-109)||(13797126-13797220)
chr7 (12-109)||(8013653-8013754)
chr7 (12-108)||(9450325-9450425)
chr7 (15-71)||(12141499-12141556)
chr7 (18-66)||(19404948-19404997)
chr7 (7-105)||(24351025-24351128)
chr7 (7-66)||(25255086-25255146)
chr7 (18-92)||(39171786-39171864)
chr7 (142-217)||(41331047-41331123)
chr7 (12-71)||(48317000-48317060)
chr7 (142-216)||(28059772-28059847)
chr7 (33-107)||(42978412-42978489)
chr7 (12-66)||(48061270-48061325)
chr7 (21-62)||(5078590-5078632)
chr7 (12-104)||(22742745-22742841)
chr7 (145-221)||(27788298-27788375)
chr7 (145-221)||(27791454-27791531)
chr7 (32-65)||(45350011-45350044)
[»] chr6 (19 HSPs)
chr6 (7-108)||(30493336-30493438)
chr6 (142-219)||(9689269-9689347)
chr6 (12-71)||(12170337-12170397)
chr6 (10-108)||(3913760-3913861)
chr6 (12-108)||(29320050-29320150)
chr6 (12-108)||(33053356-33053456)
chr6 (34-109)||(7976376-7976453)
chr6 (142-216)||(24319039-24319114)
chr6 (190-228)||(17224207-17224245)
chr6 (19-63)||(23128468-23128513)
chr6 (156-216)||(28222903-28222964)
chr6 (31-64)||(34018409-34018442)
chr6 (152-216)||(34574123-34574188)
chr6 (29-108)||(68207-68288)
chr6 (12-71)||(606046-606106)
chr6 (19-71)||(1523250-1523302)
chr6 (188-216)||(3298936-3298964)
chr6 (12-71)||(30776508-30776568)
chr6 (31-71)||(30894478-30894518)
[»] chr2 (30 HSPs)
chr2 (31-108)||(12648132-12648212)
chr2 (12-108)||(27097594-27097693)
chr2 (18-101)||(29574828-29574914)
chr2 (12-105)||(10237401-10237498)
chr2 (15-108)||(31788267-31788364)
chr2 (31-73)||(35220177-35220219)
chr2 (15-66)||(1415421-1415473)
chr2 (12-71)||(4778604-4778664)
chr2 (18-108)||(7646283-7646377)
chr2 (141-226)||(3596275-3596361)
chr2 (12-108)||(4098914-4099014)
chr2 (18-71)||(7678072-7678126)
chr2 (17-62)||(19597738-19597784)
chr2 (7-107)||(32448804-32448908)
chr2 (12-108)||(37994086-37994185)
chr2 (32-108)||(37876807-37876886)
chr2 (12-71)||(3308790-3308850)
chr2 (33-104)||(18107946-18108020)
chr2 (15-66)||(18763324-18763376)
chr2 (15-66)||(19062543-19062595)
chr2 (16-71)||(36943316-36943372)
chr2 (33-108)||(43397329-43397407)
chr2 (142-216)||(1964379-1964454)
chr2 (16-105)||(14955337-14955430)
chr2 (143-228)||(39635327-39635414)
chr2 (39-108)||(5428084-5428156)
chr2 (19-71)||(7448099-7448152)
chr2 (34-71)||(24461290-24461327)
chr2 (156-216)||(40363040-40363101)
chr2 (188-216)||(42480216-42480244)
[»] chr1 (26 HSPs)
chr1 (7-108)||(44543077-44543181)
chr1 (12-72)||(11462636-11462697)
chr1 (12-109)||(45415362-45415463)
chr1 (12-108)||(49626714-49626814)
chr1 (141-220)||(7000927-7001007)
chr1 (34-108)||(34878482-34878559)
chr1 (7-65)||(45789415-45789474)
chr1 (15-107)||(12634972-12635068)
chr1 (142-227)||(26909828-26909914)
chr1 (142-227)||(37280728-37280813)
chr1 (35-108)||(32679311-32679387)
chr1 (19-68)||(34528566-34528616)
chr1 (12-105)||(48749997-48750093)
chr1 (141-227)||(10632719-10632807)
chr1 (7-66)||(18939171-18939231)
chr1 (31-66)||(1742130-1742165)
chr1 (15-108)||(7836957-7837054)
chr1 (142-216)||(31124607-31124682)
chr1 (16-93)||(21686692-21686772)
chr1 (33-66)||(15836042-15836075)
chr1 (145-213)||(24910450-24910519)
chr1 (7-90)||(31692646-31692733)
chr1 (19-71)||(32394843-32394896)
chr1 (167-216)||(42727006-42727055)
chr1 (143-214)||(11860069-11860141)
chr1 (168-227)||(24875023-24875083)
[»] chr5 (17 HSPs)
chr5 (15-108)||(38597598-38597695)
chr5 (12-105)||(39567099-39567196)
chr5 (19-105)||(14211037-14211126)
chr5 (15-108)||(13007029-13007126)
chr5 (15-107)||(9113916-9114012)
chr5 (18-108)||(10332747-10332840)
chr5 (12-65)||(34945268-34945322)
chr5 (19-71)||(31391952-31392005)
chr5 (12-71)||(6012326-6012386)
chr5 (16-97)||(2979504-2979589)
chr5 (142-216)||(23155919-23155994)
chr5 (142-216)||(37553894-37553969)
chr5 (142-216)||(37684515-37684590)
chr5 (12-62)||(13421792-13421842)
chr5 (19-71)||(38007198-38007251)
chr5 (133-221)||(24456206-24456294)
chr5 (145-228)||(33018483-33018566)
[»] scaffold0445 (1 HSPs)
scaffold0445 (15-109)||(1144-1242)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-108)||(58273-58367)
[»] scaffold0884 (1 HSPs)
scaffold0884 (12-71)||(2160-2220)
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-109)||(15292-15386)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-71)||(92941-93001)
[»] scaffold0017 (1 HSPs)
scaffold0017 (12-71)||(32936-32996)
[»] scaffold0026 (1 HSPs)
scaffold0026 (33-109)||(72074-72153)
[»] scaffold0246 (1 HSPs)
scaffold0246 (145-216)||(24409-24481)
[»] scaffold0219 (1 HSPs)
scaffold0219 (15-60)||(15029-15075)
[»] scaffold0888 (1 HSPs)
scaffold0888 (12-60)||(1862-1911)
[»] scaffold0492 (1 HSPs)
scaffold0492 (33-66)||(12762-12795)
[»] scaffold0038 (1 HSPs)
scaffold0038 (156-216)||(23401-23462)
[»] scaffold0634 (1 HSPs)
scaffold0634 (31-71)||(8355-8395)
[»] scaffold0088 (1 HSPs)
scaffold0088 (12-71)||(50627-50687)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 18048813 - 18048418
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaa-taacctaaaaccactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18048813 gaaagaaggggaaaaaagatgcagggg-tgattctaggtcaaaaaaataacctaaaaccactcctcgacgagcgaaagagaaagaaaacttaaagagaag 18048715  T
Q  106 ttgaggttagataaagtagaaatatttaattggtaagacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatattta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||    
T  18048714 ttgaggttagataaagtagaaatatttaattggtaagacattgcttaatttatgcagagggcgaggttcgaactccggacactccacttctccatattta 18048615  T
Q  205 aatgtgtgagcttcagctactagagaaaacaattaaaatacttaaagtgataaacatatacaacc------------atacatacatattatttaaaagt 292  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  18048614 aatgcgtgagcttcacctactagagaaaacaattaaaatacttaaagtgataaacatatacaaccatacatacatatatacatacatattatttaaaagt 18048515  T
Q  293 ttatatgtgcataatgacggtgtttgaacnnnnnnnnncagagataactcacttattgtttgtgtataaacaacgacttttaaatcgttcatctcat 389  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18048514 ttatatgtgcataatgacggtgtttgaacaaaaaaaaccagagataactcacttattgtttgtgtataaacaacgacttttaaatcgttcatgtcat 18048418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 18935707 - 18935611
Alignment:
Q  12 aaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||||||||| |||||||||||||||||||| | |||| ||   ||| |||||||| |||||||| || ||||||||||| |||||||    
T  18935707 aaggggaaaaaagatgcagagggtgattctaggtcaaaaattgaccttaaatcacccctcctcgatgagcgaaagaggaagaaaacttagagagaag 18935611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 2520698 - 2520598
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||    
T  2520698 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagtt 2520599  T
Q  108 g 108  Q
    |    
T  2520598 g 2520598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 4142942 - 4143002
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  4142942 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 4143002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 23132850 - 23132771
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccgacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    |||||||| ||||||||| || |  ||||||||||||||||   | ||||||||||||||||||||||||||||| ||||    
T  23132850 gacattgcataatttatgcagggatcggggttcgaactccggacacccacttctccatatttaaatgtgtgagctccagc 23132771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 29406383 - 29406458
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||||||||||||||| ||||| ||||||||||| |||||| ||||||||||    
T  29406383 gacattgcataatttatgcaggggtcggggttcgaactccggacaacccacttctccacatttaattgtgtgagct 29406458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 32766435 - 32766380
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  32766435 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccac 32766380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 47320589 - 47320690
Alignment:
Q  12 aaggggaaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaaccactcct---cgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| |  |||||| || |||||| ||| |||||||||||| |||   ||| |||||||| |||| |||||||||||||||||||    
T  47320589 aaggggaaaaaagatgcagagttgtgattttaagtcaaagaatgacctaaaaccaccccttctcgatgagcgaaagagaaggaaaacttaaagagaagtt 47320688  T
Q  108 ga 109  Q
    ||    
T  47320689 ga 47320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 22300746 - 22300666
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccact---cctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||| ||||||||||||| |||||||||||||   |||||||||| |||| ||||| |||| ||| ||||||||||    
T  22300746 ggggtgattttaggtcaaaaaatgacctaaaaccactcctcctcgacgagtgaaagagaaataaaatttagagagaagttg 22300666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 43627306 - 43627218
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctactaga 228  Q
    ||||||||| ||||||||| || || |||||||| ||| | | ||| ||||||||||||||||||| ||||||||||  ||||||||||    
T  43627306 agacattgcataatttatgcaggggtcggggttcaaaccctggacactccacttctccatatttaattgtgtgagctctagctactaga 43627218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 22038981 - 22039074
Alignment:
Q  6 agaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaactt 96  Q
    |||||||| |||||||||||||||  |||||||||||| || |||| | |||||||||||   || ||||| ||| |||| |||||||||||||    
T  22038981 agaaagaaagggaaaaaagatgcaaagggtgattctagatccaaaattgacctaaaaccacccctgctcgatgagtgaaagagaaagaaaactt 22039074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 56040830 - 56040889
Alignment:
Q  9 aagaaggggaaaaaagatgcag-ggggtgattctaggtc-aaaaaataacctaaaaccac 66  Q
    ||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  56040830 aagaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaaatgacctaaaaccac 56040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 22611104 - 22611005
Alignment:
Q  12 aaggggaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| ||  |||||||||||||||| ||||| |||||||||||   ||||||||||| ||||  |||||||||  ||| |||||||||    
T  22611104 aaggggaaaaaagatgtagatgggtgattctaggtca-aaaatgacctaaaaccacccctcctcgacgaacgaaggagaaagaaagtttagagagaagtt 22611006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 45418423 - 45418385
Alignment:
Q  35 tgattctaggtcaaaaaataacctaaaaccactcctcga 73  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  45418423 tgattctaggtcaaaaaatgacctaaaaccactcctcga 45418385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 26091121 - 26091158
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactc 68  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26091121 ggggtgattctaggtcaaaaaataacctaaaatcactc 26091158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 6171013 - 6170933
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaa-ctccgacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    |||||||| |||||||||||| ||  |||||||||| ||| |||| || ||||||||| |||||| |||||||| ||||||    
T  6171013 gacattgcataatttatgtaggggctggggttcgaacctcagacactctacttctccacatttaattgtgtgagtttcagc 6170933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 10496259 - 10496203
Alignment:
Q  15 gggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||| |  |||||||||||||||||||| | |||||||||||| ||||    
T  10496259 gggaaaaaagatgtatagggtgattctaggtcaaaaattgacctaaaaccacacctc 10496203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 19853700 - 19853759
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || |||||||||||||||| |||||| |||||||||||| ||||    
T  19853700 aaggggaaaaaagatgtagaggggtgattctaggtc-aaaaatgacctaaaaccacccctc 19853759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 22558653 - 22558713
Alignment:
Q  12 aaggggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || | |||||||||| |||||||||| |||||||||||| ||||    
T  22558653 aaggggaaaaaagatgtagagaggtgattctatgtcaaaaaatgacctaaaaccacccctc 22558713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 25224498 - 25224578
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaac-tccgacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    |||||||| ||||||||| || || ||| |||||||| || ||||  |||||||| |||||||| ||||||||||||||||    
T  25224498 gacattgcataatttatgcaggggtcggagttcgaacctcggacaccccacttcttcatatttatatgtgtgagcttcagc 25224578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 40486470 - 40486542
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    ||||| ||||||||| || || |||||||||||| ||| ||| ||||||||| || |||||||||||||||||    
T  40486470 attgcataatttatgcaggggccggggttcgaaccccggacactccacttcttcacatttaaatgtgtgagct 40486542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 42032715 - 42032812
Alignment:
Q  12 aaggggaaaaaagatgcaggg-ggtgattctaggtcaaaa-aataacctaaaaccactcc---tcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||| |||||||| || | ||||||||||| |||||| |||||||||||||||||||   |||| ||| | ||||||||||||||||| |||||||    
T  42032715 aaggggataaaagatgaagagaggtgattctagatcaaaaaaataacctaaaaccactcctcttcgatgagtg-aaaagaaagaaaacttagagagaag 42032812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 53810949 - 53810889
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||| ||||||||| || ||||||||| ||||||||||||| |||||||||||| ||||    
T  53810949 aagggggaaaaagatgtagaggggtgattataggtcaaaaaatgacctaaaaccacccctc 53810889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 2629605 - 2629680
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| ||| |||  ||||||||||| |||||| ||||||||||    
T  2629605 gacattgcataatttatgcaggggtcggggttcgaaccccgaacaccccacttctccacatttaattgtgtgagct 2629680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 11294882 - 11294807
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| ||| |||  ||||||||||| |||||||||| ||||||    
T  11294882 gacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaatgtttgagct 11294807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 22063968 - 22064019
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaa 62  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  22063968 aaggagaaaaaatatgcagaggggtgattctaggtcaaaaaatgacctaaaa 22064019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 28715741 - 28715804
Alignment:
Q  167 cggggttcgaactccg-acaatccacttctccatatttaaa-tgtgtgagcttcagctactaga 228  Q
    |||||||||||| ||| ||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  28715741 cggggttcgaaccccggacactccacttctccacatttaaaatgtgtgagcttcagccactaga 28715804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 35348224 - 35348127
Alignment:
Q  15 gggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||| || | ||||||||||||||||||||| |||||||   ||| |||| ||| |||||||  ||||| |||  ||||||||||||||    
T  35348224 gggaaaaaagatgtagagaggtgattctaggtcaaaaaatgacctaaaatcacccctccacgatgagcgaaggagaaaaaaagtttaaagagaagttg 35348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 43510120 - 43510065
Alignment:
Q  12 aaggggaaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||| |||||||||| || || |||||||||||||||||||| ||||||||||||    
T  43510120 aagggaaaaaaagatgtagaggagtgattctaggtcaaaaaatgacctaaaaccac 43510065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 51888424 - 51888505
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    |||||||||| | |||||||||| |||||||||||   |||||||| ||| |||| ||||||||||| || ||| |||||||    
T  51888424 ggggtgattcaatgtcaaaaaatgacctaaaaccacccctcctcgatgagtgaaagagaaagaaaacgtagagaaaagttga 51888505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 51890823 - 51890898
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| || ||||  ||||||||||| |||||| ||||||||||    
T  51890823 gacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagct 51890898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 9643293 - 9643198
Alignment:
Q  18 aaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaacca----ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||  | |||||||||||||||||||| || ||||||||    ||| |||| |||| ||| | |||||||||||| ||||||||||    
T  9643293 aaaaaagatgcagatgagtgattctaggtcaaaaaatgacataaaaccaccccctcttcgatgagcaaaagataaagaaaacttagagagaagttg 9643198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26633878 - 26633958
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||||||||||||| |||||| ||||   |||||| | || |||| ||||||||||  ||| ||||||||||    
T  26633878 ggggtgattctaggtcaaaaaatgacctaagaccacccctcctcaatgaacgaagaagaaagaaagtttagagagaagttg 26633958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 36161614 - 36161580
Alignment:
Q  32 gggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  36161614 gggtgattctaggtcaaaaaatgacctaaaaccac 36161580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 51777895 - 51777945
Alignment:
Q  167 cggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||||||||||| |||  ||||||||||| |||||||||||||||||    
T  51777895 cggggttcgaactccggacatcccacttctccacatttaaatgtgtgagct 51777945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 38848154 - 38848089
Alignment:
Q  152 aatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| || || |||||||||||| ||| |||  ||||||||||| |||||||||||||||||    
T  38848154 aatttatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaatgtgtgagct 38848089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 48257658 - 48257737
Alignment:
Q  32 gggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||||||||| || ||||||||   |||||||| |  ||||  |||||||||  ||||||||||||||    
T  48257658 gggtgattctaggtcaaaaaatgacataaaaccacccctcctcgatgtacgaatgagaaagaaagtttaaagagaagttg 48257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 55227890 - 55227857
Alignment:
Q  37 attctaggtcaaaaaataacctaaaaccactcct 70  Q
    ||||||||||||||||| ||||||||||||||||    
T  55227890 attctaggtcaaaaaatcacctaaaaccactcct 55227857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 24099258 - 24099314
Alignment:
Q  12 aaggggaaaaaagatgcaggggg-tgattctaggtc-aaaaaataacctaaaaccac 66  Q
    |||||||||||||||| || ||| |||||||||||| ||||||| ||||||||||||    
T  24099258 aaggggaaaaaagatgtagagggatgattctaggtcaaaaaaatgacctaaaaccac 24099314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 42081764 - 42081836
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaa-ctccgacaatccacttctccatatttaaatgtgtgagct 216  Q
    ||||| |||||||||||| ||  |||||||||| ||  |||| |||||||||||| |||||| ||||||||||    
T  42081764 attgcataatttatgtaggggctggggttcgaatcttggacactccacttctccacatttaattgtgtgagct 42081836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 4396513 - 4396908
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaa-aataacctaaaaccactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4396513 gaaagaaggggaaaaaagatgcagggg-tgattctaggtcaaaaaaataacctaaaaccactcctcgacgagcgaaagagaaagaaaacttaaagagaag 4396611  T
Q  106 ttgaggttagataaagtagaaatatttaattggtaagacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatattta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||    
T  4396612 ttgaggttagataaagtagaaatatttaattggtaagacattgcttaatttatgcagagggcgaggttcgaactccggacactccacttctccatattta 4396711  T
Q  205 aatgtgtgagcttcagctactagagaaaacaattaaaatacttaaagtgataaacatatacaacc------------atacatacatattatttaaaagt 292  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  4396712 aatgcgtgagcttcacctactagagaaaacaattaaaatacttaaagtgataaacatatacaaccatacatacatatatacatacatattatttaaaagt 4396811  T
Q  293 ttatatgtgcataatgacggtgtttgaacnnnnnnnnncagagataactcacttattgtttgtgtataaacaacgacttttaaatcgttcatctcat 389  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4396812 ttatatgtgcataatgacggtgtttgaacaaaaaaaaccagagataactcacttattgtttgtgtataaacaacgacttttaaatcgttcatgtcat 4396908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 29239232 - 29239143
Alignment:
Q  18 aaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaaccac--tcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||  | |||||| |  |||| ||||||||||||||||||||||    
T  29239232 aaaaaagatgtagggggtgattctagatcaaaaaatgacctaaaaccacctttctcgacaaatgaaagagaaagaaaacttaaagagaag 29239143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 21290002 - 21290104
Alignment:
Q  7 gaaagaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagag 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||   ||| |||||| | ||| |||| || ||||||||||| ||||    
T  21290002 gaaagaaggggaaaaaagatgcagaggggtgattctaggtcaaaaattgacctaaaatcacctctcctccatgagtgaaagaggaagaaaacttagagag 21290101  T
Q  103 aag 105  Q
    |||    
T  21290102 aag 21290104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 10232971 - 10232911
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  10232971 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 10232911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 50194474 - 50194571
Alignment:
Q  15 gggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaaaaccactc---ctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||| ||||||| | ||||||| ||||||||||||| | ||||||||||||   ||||||||| |||| |||| ||||||||| ||||||||||    
T  50194474 gggaaaaaggatgcagagaggtgattttaggtcaaaaaatgatctaaaaccactccttctcgacgagtgaaagagaacgaaaacttagagagaagttg 50194571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 9685022 - 9685108
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccga-caatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    |||||||| ||||||||| || ||  ||||||||||  |||| || |||||||||||||||||||||||||||||| |||| |||||    
T  9685022 gacattgcataatttatgcaggggctggggttcgaatcccgaacactccacttctccatatttaaatgtgtgagctccagccactag 9685108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 46817396 - 46817318
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactccga-caatccacttctccatatttaaatgtgtgagcttc 218  Q
    ||||||||| |||||||||||||||  |||||| |||| |||| ||  ||||||||||| |||||||||||||||||||    
T  46817396 agacattgcataatttatgtagaggttggggtttgaaccccgaacaccccacttctccacatttaaatgtgtgagcttc 46817318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 51303827 - 51303923
Alignment:
Q  12 aaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||||||||| |||||||||||||||||||| | || ||||| ||   |||||||| |||  ||| || ||||||||||| |||||||    
T  51303827 aaggggaaaaaagatgcagagggtgattctaggtcaaaaattgacataaaatcatccctcctcgatgagtaaaagaggaagaaaacttagagagaag 51303923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 6954884 - 6954944
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||| ||| ||||    
T  6954884 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaatcacccctc 6954944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 4227788 - 4227713
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||||||||||||||| ||||  ||||||||||||| |||| ||||||||||    
T  4227788 gacattgcataatttatgcaggggtcggggttcgaactccggacaccccacttctccataattaattgtgtgagct 4227713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 9998368 - 9998267
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaa-aaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagt 106  Q
    |||||||||||||||| || |||||||||||||||||| ||||| |||||||||||   |||||||| || ||||  |||||||||  ||| ||||||||    
T  9998368 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagt 9998269  T
Q  107 tg 108  Q
    ||    
T  9998268 tg 9998267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 26880203 - 26880278
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||||||||||||| | ||||  ||||||||||| |||||||||||||||||    
T  26880203 gacattgcataatttatgcaggggtcggggttcgaacttcagacaccccacttctccacatttaaatgtgtgagct 26880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 46845015 - 46844929
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    |||||||| ||||||||| || || ||| |||||||| ||| |||  | ||||||||| ||||||||||||||||| ||||||||||    
T  46845015 gacattgcataatttatgcaggggtcggagttcgaaccccggacaccctacttctccacatttaaatgtgtgagctccagctactag 46844929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 7546505 - 7546414
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||| ||||||||||||| ||||||| | |||||||   ||| |||||||| ||| || | |||||||||||||| |||||||    
T  7546505 aaaaaagatgcagaggggtgattctagatcaaaaattgacctaaaatcacccctcctcgatgagtgagagagaaagaaaacttagagagaag 7546414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9797724 - 9797773
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  9797724 aaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccac 9797773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 36461619 - 36461676
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactc 68  Q
    |||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||    
T  36461619 aaggggaaaaaagatgtagaggggtgaatataggtcaaaaaatgacctaaaaccactc 36461676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40556592 - 40556552
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  40556592 ggggtgattctaggtcaaaaaatgacctaaaaccacccctc 40556552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 54148885 - 54148829
Alignment:
Q  16 ggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||| || ||||||||| ||||||||||||| |||||||||||| ||||    
T  54148885 ggaaaaaagatgtagaggggtgattgtaggtcaaaaaatgacctaaaaccacccctc 54148829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 19222630 - 19222555
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| ||| |||  ||||||||||| |||||| ||||||||||    
T  19222630 gacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagct 19222555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 24303416 - 24303491
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| || ||||  ||||||||||| |||||| ||||||||||    
T  24303416 gacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagct 24303491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 33579765 - 33579714
Alignment:
Q  16 ggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||||| || ||||||||||||||||||||||| || |||||||||    
T  33579765 ggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacttaaaaccac 33579714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 49443467 - 49443392
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||| |||||||| ||| |||  ||||||||||| |||||||||||||||||    
T  49443467 gacattgcataatttatgcaggggccggagttcgaaccccggacaccccacttctccacatttaaatgtgtgagct 49443392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 12050836 - 12050936
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||| |||||| || ||||||||||||  |||||||||||| |||||||||   |||| || || ||||  |||||||||| ||| |||||||||    
T  12050836 aaggggaaagaagatgtagaggggtgattctaaatcaaaaaataacttaaaaccacacatccttgatgaacgaaggagaaagaaaatttagagagaagtt 12050935  T
Q  108 g 108  Q
    |    
T  12050936 g 12050936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 32701375 - 32701299
Alignment:
Q  35 tgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||||||||| |||||||||||   | |||||| || ||||  |||||||||  ||||||||||||||    
T  32701375 tgattctaggtcaaaaaatgacctaaaaccaccccacctcgatgaacgaaggagaaagaaagtttaaagagaagttg 32701299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 35175281 - 35175209
Alignment:
Q  29 agggggtgattctaggtcaa-aaaataacctaaaaccactcctc---gacgagcgaaaaagaaagaaaactta 97  Q
    |||||||||||||||||||| ||||| |||||||| ||| ||||   |||||| |||| ||||||||||||||    
T  35175281 agggggtgattctaggtcaaaaaaatgacctaaaagcacccctcttagacgagtgaaagagaaagaaaactta 35175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 38949700 - 38949786
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    |||||||| ||||||||| || || |||||||||||| ||| |||  ||||||||||| ||||||  ||||||||| |||| |||||    
T  38949700 gacattgcataatttatgcaggggccggggttcgaaccccgaacaccccacttctccacatttaatagtgtgagctccagccactag 38949786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 49284895 - 49284933
Alignment:
Q  188 ccacttctccatatttaaatgtgtgagcttcagctacta 226  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  49284895 ccacttctccacatttaattgtgtgagcttcagctacta 49284933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 629087 - 629193
Alignment:
Q  7 gaaagaaggggaaaaaa--gatgcaggggg-tgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaag 100  Q
    |||||||||||||||||  |||||||  || ||||| ||||||||| ||| |||||||||||   |||||||| ||| ||||  ||| ||||||||| ||    
T  629087 gaaagaaggggaaaaaaaagatgcagaaggatgattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagggaaggaaaacttagag 629186  T
Q  101 agaagtt 107  Q
    |||||||    
T  629187 agaagtt 629193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 8914599 - 8914508
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||| ||||| ||||||||||||||| | |||||||   ||| || ||||| ||| |||| || ||||||||||| |||||||    
T  8914599 aaaaaagatgcagaggggttattctaggtcaaaaattgacctaaaatcaccccttctcgatgagtgaaagaggaagaaaacttagagagaag 8914508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 10108137 - 10108079
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||  ||||| |||||||||||| ||||    
T  10108137 aaggggaaaaaagatgtagaggggtgattctaggtc--aaaatgacctaaaaccacccctc 10108079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 29921954 - 29921856
Alignment:
Q  12 aaggggaaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaa----ccactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||||||| || |  |||||| ||| ||||||||| ||||||||    || |||||||||||  |||| |||||||||||||| |||||||    
T  29921954 aaggggaaaaaagatggagagaagtgattttagctcaaaaaatgacctaaaaaccacccctcctcgacgaatgaaagagaaagaaaacttagagagaag 29921856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 29971107 - 29971009
Alignment:
Q  12 aaggggaaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaa----ccactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||||||| || |  |||||| ||| ||||||||| ||||||||    || |||||||||||  |||| |||||||||||||| |||||||    
T  29971107 aaggggaaaaaagatggagagaagtgattttagctcaaaaaatgacctaaaaaccacccctcctcgacgaatgaaagagaaagaaaacttagagagaag 29971009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 36729523 - 36729560
Alignment:
Q  189 cacttctccatatttaaatgtgtgagcttcagctacta 226  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  36729523 cacttctccatatttaattatgtgagcttcagctacta 36729560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 39709094 - 39709151
Alignment:
Q  171 gttcgaactccgacaatccacttctccatattt-aaatgtgtgagcttcagctactag 227  Q
    |||||||| |||||| |||||||||||| |||| ||||||||||||| |||| |||||    
T  39709094 gttcgaaccccgacactccacttctccacatttaaaatgtgtgagctccagccactag 39709151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 43280094 - 43280167
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgag 214  Q
    |||||||| ||||||||| || || |||||||||||  ||| |||  ||||||||||| |||||||||||||||    
T  43280094 gacattgcataatttatgcaggggccggggttcgaatcccggacaccccacttctccacatttaaatgtgtgag 43280167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 47896047 - 47895952
Alignment:
Q  17 gaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||| || ||||||||||||||||||||||| | ||| |||||   |||||||| || ||||  |||||||||  ||| ||||||||||    
T  47896047 gaaaaaagatgtagaggggtgattctaggtcaaaaaatgatctataaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 47895952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5174055 - 5173979
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactccga-caatccacttctccatatttaaatgtgtgagct 216  Q
    ||||||||| ||||||||| || ||  ||||||||||| |||| ||  ||||||||||| |||||| ||||||||||    
T  5174055 agacattgcataatttatgcaggggcaggggttcgaaccccgaacaccccacttctccacatttaattgtgtgagct 5173979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 12149990 - 12150030
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| |||||||||||||||| ||||||||| ||||    
T  12149990 ggggtgattataggtcaaaaaataacttaaaaccacccctc 12150030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 31272018 - 31272095
Alignment:
Q  35 tgattctaggtcaaaaaataacctaaaacca----ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||| |||||||||||||||| ||    |||||||| || ||||  | |||||||||||| ||||||||||    
T  31272018 tgattctaggttaaaaaataacctaaaatcacaccctcctcgatgaacgaaggaaaaagaaaacttagagagaagttg 31272095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 32732556 - 32732504
Alignment:
Q  167 cggggttcgaactccg-acaatccacttctccatatttaaa-tgtgtgagctt 217  Q
    |||||||||||||||| ||| |||||||||||||| ||||| |||||||||||    
T  32732556 cggggttcgaactccggacactccacttctccataattaaattgtgtgagctt 32732504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 43016738 - 43016657
Alignment:
Q  31 ggggtgattctaggtcaaa--aaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||||||  || | ||||||||||||   ||||||| || ||||| |||||||||| ||| |||||||||    
T  43016738 ggggtgattctaggtcaaaagaactgacctaaaaccacccttcctcgatgaacgaaagagaaagaaaatttagagagaagtt 43016657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 47042240 - 47042300
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||||| ||||    
T  47042240 aagggaaaaaaagatgtagaggggtgattataggttaaaaaatgacctaaaaccacccctc 47042300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 48650943 - 48650983
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| ||||||||||||| |||||||||||| ||||    
T  48650943 ggggtgattttaggtcaaaaaatgacctaaaaccacccctc 48650983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 54288132 - 54288100
Alignment:
Q  189 cacttctccatatttaaatgtgtgagcttcagc 221  Q
    ||||||||||||||||| |||||||||||||||    
T  54288132 cacttctccatatttaattgtgtgagcttcagc 54288100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 37971195 - 37971098
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||  ||| ||||||||||| ||| ||||||||||    
T  37971195 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccactcctcgatgaatgaagaagaaagaaaatttagagagaagttg 37971098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 1239589 - 1239690
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||  ||||||||||||   ||||||| ||||| || |||| ||||||||| |||||||||    
T  1239589 aaggggaaaaaagatgcagaggggtgattttaggtcaaagaaggacctaaaaccacccctcctcgatgagcggaagagaaggaaaacttagagagaagtt 1239688  T
Q  108 ga 109  Q
    ||    
T  1239689 ga 1239690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 8981100 - 8981000
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||| ||||||  ||||||||| ||||||||||||| |||||||||||   |||||||||||| |||  |||| ||||||||| |||||||||    
T  8981100 aaggggaaaaaggatgcataggggtgattttaggtcaaaaaatgacctaaaaccacccctcctcgacgagtgaatgagaacgaaaacttagagagaagtt 8981001  T
Q  108 g 108  Q
    |    
T  8981000 g 8981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 1236879 - 1236980
Alignment:
Q  12 aaggggaaaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||| | ||| ||||||||| ||| ||||||||||||   ||||| | |||||||| |||| ||||||||| |||||||||    
T  1236879 aaggggaaaaaagatgcagagggattattttaggtcaaagaatgacctaaaaccacccctcctcaatgagcgaaagagaaggaaaacttagagagaagtt 1236978  T
Q  108 ga 109  Q
    ||    
T  1236979 ga 1236980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 15344209 - 15344109
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||   |||||||| ||| |||| ||||  |||||||| |||||||||    
T  15344209 aaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaagaaaaacttagagagaagtt 15344110  T
Q  108 g 108  Q
    |    
T  15344109 g 15344109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 15433274 - 15433174
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||   |||||||| ||| |||| ||||  |||||||| |||||||||    
T  15433274 aaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaagaaaaacttagagagaagtt 15433175  T
Q  108 g 108  Q
    |    
T  15433174 g 15433174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 15524578 - 15524478
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||   |||||||| ||| |||| ||||  |||||||| |||||||||    
T  15524578 aaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaagaaaaacttagagagaagtt 15524479  T
Q  108 g 108  Q
    |    
T  15524478 g 15524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 31013757 - 31013857
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||| ||||||||| || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||    
T  31013757 aagggggaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagtt 31013856  T
Q  108 g 108  Q
    |    
T  31013857 g 31013857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 7677486 - 7677562
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaa 104  Q
    ||||||||||||||||||||||| |||||||||||   |||||| | || |||| ||||||||||| ||| ||||||    
T  7677486 ggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcaatgaacgaagaagaaagaaaatttagagagaa 7677562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 41458362 - 41458408
Alignment:
Q  182 gacaatccacttctccatatttaaatgtgtgagcttcagctactaga 228  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||    
T  41458362 gacactccacttctccacatttaaatgtgtgagcttcagccactaga 41458408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 550327 - 550402
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaa-ctccgacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||||||||||| |||  ||| ||||||||| || |||||||||||||||||    
T  550327 gacattgcataatttatgcaggggtcggggttcgaatctcgaacactccacttcttcacatttaaatgtgtgagct 550402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 8826110 - 8826056
Alignment:
Q  14 ggggaaaaaagatgca--gggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||| ||  |||||||||||||| ||||||||| ||||||||||||    
T  8826110 ggggaaaaaagatacaaagggggtgattctagatcaaaaaatgacctaaaaccac 8826056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 12770394 - 12770469
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| || ||||  ||||||||||| |||||| ||||||||||    
T  12770394 gacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagct 12770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 41272120 - 41272195
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || ||  ||||||||||||| | |||  ||||||||||| |||||||||||||||||    
T  41272120 gacattgcataatttatgcaggggctggggttcgaactctggacacaccacttctccacatttaaatgtgtgagct 41272195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 20553451 - 20553531
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||| |||||| | |||||||||   |||||||| || |||| |||||| |||  ||||||||||||||    
T  20553451 ggggtgattctaggtccaaaaatgatctaaaaccacccctcctcgatgaacgaagaagaaaaaaagtttaaagagaagttg 20553531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 8183371 - 8183427
Alignment:
Q  167 cggggttcgaactcc-gacaatccacttctccatattt-aaatgtgtgagcttcagc 221  Q
    |||||||||||| || ||||| |||||||||||||||| ||||||||||||| ||||    
T  8183371 cggggttcgaaccccagacaacccacttctccatatttaaaatgtgtgagctccagc 8183427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 14545110 - 14545146
Alignment:
Q  32 gggtgattctaggtcaaaaaataacctaaaaccactc 68  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  14545110 gggtgattttaggtcaaaaaatgacctaaaaccactc 14545146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 25191255 - 25191303
Alignment:
Q  15 gggaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaa 62  Q
    ||||||||||||| ||  |||||||||||||||||||||| ||||||||    
T  25191255 gggaaaaaagatgtagatgggtgattctaggtcaaaaaatgacctaaaa 25191303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 30757007 - 30757108
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||| |||||||||| ||| |||||||||    
T  30757007 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaattacctaaaaccacccctcctcgatgaacgaaagagaaagaaaatttagagagaagtt 30757106  T
Q  108 ga 109  Q
    ||    
T  30757107 ga 30757108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 1749325 - 1749426
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagaga 103  Q
    ||||||| ||||||||||||| || |||||||||||||||||||| | |||||||   ||| |||||||| ||| |||| || ||||||||||| |||||    
T  1749325 gaaagaaagggaaaaaagatgaagcgggtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaagaaaacttagagaga 1749424  T
Q  104 ag 105  Q
    ||    
T  1749425 ag 1749426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 11343707 - 11343615
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaactt 96  Q
    |||||||  |||||||| ||||| ||||||||||||||||||||||||| |||||   ||| || ||||| |||||||| |||||||||||||    
T  11343707 gaaagaaatggaaaaaaaatgcaaggggtgattctaggtcaaaaaataaactaaaatcaccccttctcgatgagcgaaagagaaagaaaactt 11343615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 34899795 - 34899892
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||| |||  || ||||  |||||||||  ||| ||||||||||    
T  34899795 aagggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccactcatcggtgaacgaaggagaaagaaagtttagagagaagttg 34899892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 40200768 - 40200829
Alignment:
Q  167 cggggttcgaactccgacaatccacttctccatattt-aaatgtgtgagcttcagctactag 227  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  40200768 cggggttcgaaccccgacactccacttctccatatttaaaatgtgtgagcttcagccactag 40200829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 19296781 - 19296721
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  19296781 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 19296721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 35132854 - 35132757
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||||||| || ||||||||||||||||||||| | |||||||   ||| |||||||| ||| |||| || ||||||||||| |||||||    
T  35132854 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaagaaaacttagagagaag 35132757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 37837649 - 37837706
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  37837649 gggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 37837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 13797126 - 13797220
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    ||||||||| || ||||||||||||||| ||||||| |||||||||||    ||||||| || ||||  |||||||||| |||||||||||||||    
T  13797126 aaaaagatgtagaggggtgattctaggttaaaaaatgacctaaaaccatccatcctcgatgaacgaacgagaaagaaaatttaaagagaagttga 13797220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 8013653 - 8013754
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||| |||||||||| || ||||||||||||||||||||||| | |||||||||   |||||||| || | || ||||||||||  ||| |||||||||    
T  8013653 aagggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgatctaaaaccacccctcctcgatgaacaaagaagaaagaaagtttagagagaagtt 8013752  T
Q  108 ga 109  Q
    ||    
T  8013753 ga 8013754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 9450325 - 9450425
Alignment:
Q  12 aaggggaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||| |||||| ||  |||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||||| |||||||    
T  9450325 aaggggaaacaagatgtagatgggtgattctaggtcaaaaaatgacctaaaaccatccctcctcgatgaacgaaggagaaagaaagtttaaaaagaagtt 9450424  T
Q  108 g 108  Q
    |    
T  9450425 g 9450425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 12141499 - 12141556
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||| || |||||||||||| |||||||||| |||||||||||| ||||    
T  12141499 gggaaaaaagatgtagaggggtgattctatgtcaaaaaatgacctaaaaccacccctc 12141556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 19404948 - 19404997
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  19404948 aaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccac 19404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 24351025 - 24351128
Alignment:
Q  7 gaaagaaggggaaaaaag-atgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaaga 101  Q
    ||||||| |||||||||| |||||  ||||||||||||||||||||| | |||||||   ||| |||||||| ||| || | || |||||||||||||||    
T  24351025 gaaagaaagggaaaaaaggatgcacaggggtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgagagaggaagaaaacttaaaga 24351124  T
Q  102 gaag 105  Q
    ||||    
T  24351125 gaag 24351128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 25255146 - 25255086
Alignment:
Q  7 gaaagaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||| ||| |||||||||||  ||||||||| ||||||||||||| ||||||||||||    
T  25255146 gaaagaaaggggaaaaagatgcaaaggggtgattataggtcaaaaaatgacctaaaaccac 25255086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 39171786 - 39171864
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaa 92  Q
    |||||||||| || ||||||||||||||||||||||| ||||| |||||   |||||||| || |||| ||||||||||    
T  39171786 aaaaaagatgtagaggggtgattctaggtcaaaaaatgacctacaaccacccctcctcgatgaacgaagaagaaagaaa 39171864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 41331123 - 41331047
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagctt 217  Q
    |||||||| ||||||||| || || ||||||||||| |||| |||  ||||||||||| |||||| |||||||||||    
T  41331123 gacattgcataatttatgcaggggtcggggttcgaattccggacaccccacttctccacatttaattgtgtgagctt 41331047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 48317000 - 48317060
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||| ||||||||| || |||||||||||||||| |||||| |||||||||||| ||||    
T  48317000 aagggggaaaaagatgtagaggggtgattctaggtccaaaaatgacctaaaaccacccctc 48317060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 28059772 - 28059847
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||||| | |||  ||| ||||||| |||||||||||||||||    
T  28059772 gacattgcataatttatgcaggggccggggttcgaactctgaacaccccaattctccacatttaaatgtgtgagct 28059847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 42978489 - 42978412
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||    
T  42978489 ggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagtt 42978412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 48061325 - 48061270
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||||||| ||| || |||||||||||| |||||||||| ||||||||||||    
T  48061325 aaggggaaaaaatatgtagtggggtgattctaagtcaaaaaatgacctaaaaccac 48061270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 5078590 - 5078632
Alignment:
Q  21 aaagatgcag-ggggtgattctaggtcaaaaaataacctaaaa 62  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  5078590 aaagatgcagaggggtgattctaggtcaaaaaatgacctaaaa 5078632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 22742841 - 22742745
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaa 104  Q
    ||||||||||||||||||| ||||||||||||| | ||||| | |||||||   ||| |||||||| ||  |||| || ||||||||||| ||||||    
T  22742841 aaggggaaaaaagatgcagaggggtgattctagattaaaaattgacctaaaatcacccctcctcgatgaatgaaagaggaagaaaacttagagagaa 22742745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 27788298 - 27788375
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    ||||| ||||||||| || || |||||||||||| || ||||  ||||||||||| |||||||||| |||||| ||||    
T  27788298 attgcataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaatgtatgagctccagc 27788375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 27791454 - 27791531
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    ||||| ||||||||| || || |||||||||||| || ||||  ||||||||||| |||||||||| |||||| ||||    
T  27791454 attgcataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaatgtatgagctccagc 27791531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 45350011 - 45350044
Alignment:
Q  32 gggtgattctaggtcaaaaaataacctaaaacca 65  Q
    |||||||||||||||||||||| |||||||||||    
T  45350011 gggtgattctaggtcaaaaaatgacctaaaacca 45350044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 30493438 - 30493336
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaacca--ctcctcgacgagcgaaaaagaaagaaaacttaaagagaa 104  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||| ||| |||||||  ||| |||||||| |||| | ||||||||||||||||||     
T  30493438 gaaagaaagggaaaaaagatgcatggg-tgattctaggtcaaaaaatgaccgaaaaccaccctcttcgacgagtgaaagaaaaagaaaacttaaagagag 30493340  T
Q  105 gttg 108  Q
    ||||    
T  30493339 gttg 30493336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 9689347 - 9689269
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactc-cgacaatccacttctccatatttaaatgtgtgagcttca 219  Q
    |||||||| ||||||||||||||| |||||||||||| |  ||||  ||||| ||||||||||||||||||||||||||    
T  9689347 gacattgcataatttatgtagaggtcggggttcgaaccctggacaccccactcctccatatttaaatgtgtgagcttca 9689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 12170397 - 12170337
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  12170397 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 12170337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 3913760 - 3913861
Alignment:
Q  10 agaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca--ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagt 106  Q
    |||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||  |||||||| || | ||  |||||||||  ||| ||||||||    
T  3913760 agaatgggaaaaaagatgcggaggggtgattctaggtcaaaaaatgacctaaaaccaccctcctcgatgaacaaaggagaaagaaagtttagagagaagt 3913859  T
Q  107 tg 108  Q
    ||    
T  3913860 tg 3913861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 29320050 - 29320150
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| || ||||||||||||| |||||| || ||||||||||||   ||||||| || ||||  |||||||||  |||||||||||||    
T  29320050 aaggggaaaaaagatgtagaggggtgattctagatcaaaatatgacctaaaaccacccatcctcgatgaacgaaggagaaagaaagtttaaagagaagtt 29320149  T
Q  108 g 108  Q
    |    
T  29320150 g 29320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 33053356 - 33053456
Alignment:
Q  12 aaggggaaaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| || ||| ||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||    
T  33053356 aaggggaaaaaagatgtagagggatgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagtt 33053455  T
Q  108 g 108  Q
    |    
T  33053456 g 33053456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 7976376 - 7976453
Alignment:
Q  34 gtgattctaggtcaaaaaataacctaaaaccactc---ctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    |||||||||||||||||| | |||||||||||| |   ||||| ||| ||||||||||||||||||| ||| |||||||    
T  7976376 gtgattctaggtcaaaaa-tgacctaaaaccacccatgctcgatgagtgaaaaagaaagaaaacttagagaaaagttga 7976453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 24319039 - 24319114
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||||||| || |||| |||||||||||| | |||| ||||||||||    
T  24319039 gacattgcataatttatgcaggggccggggttcgaaccccggacactccacttctccacaattaattgtgtgagct 24319114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 17224207 - 17224245
Alignment:
Q  190 acttctccatatttaaatgtgtgagcttcagctactaga 228  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  17224207 acttctccatatttaattgtgtgagcttcagccactaga 17224245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 23128513 - 23128468
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaac 63  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||    
T  23128513 aaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaac 23128468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 28222903 - 28222964
Alignment:
Q  156 tatgtagagggcggggttcgaactccgacaatccacttctccatatttaaa-tgtgtgagct 216  Q
    |||| ||||| |||||||||||| | |||| |||||||||||||| ||||| ||||||||||    
T  28222903 tatgcagaggccggggttcgaacccggacactccacttctccataattaaattgtgtgagct 28222964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 34018442 - 34018409
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacc 64  Q
    ||||||||||||||||||||||| ||||||||||    
T  34018442 ggggtgattctaggtcaaaaaatgacctaaaacc 34018409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 34574188 - 34574123
Alignment:
Q  152 aatttatgtagagggcggggttcgaactccga-caatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||| |||||||| ||| |||| ||  ||||||||||| |||||||||||||||||    
T  34574188 aatttatgcagaggtcggggttcaaaccccgaacaccccacttctccacatttaaatgtgtgagct 34574123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 68207 - 68288
Alignment:
Q  29 agggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||||| |||||| |||||||||||   |||||||| || ||||  |||||||||  ||| ||||||||||    
T  68207 agggggtgattctaggtc-aaaaattacctaaaaccatccctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 68288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 606106 - 606046
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || |||||||| |||||||||||||| || ||||| ||| ||||    
T  606106 aaggggaaaaaagatgtagaggggtgatcctaggtcaaaaaatgacataaaatcacccctc 606046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 1523302 - 1523250
Alignment:
Q  19 aaaaagatgcagggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||| |||||| |||||||||||||||||||| | |||||||| ||| ||||    
T  1523302 aaaaaaatgcagagggtgattctaggtcaaaaattgacctaaaatcacccctc 1523250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 3298964 - 3298936
Alignment:
Q  188 ccacttctccatatttaaatgtgtgagct 216  Q
    |||||||||||||||||||||||||||||    
T  3298964 ccacttctccatatttaaatgtgtgagct 3298936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 30776568 - 30776508
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||| ||||||| |||||| ||||||||||||||||||||| | |||||||| ||| ||||    
T  30776568 aaggagaaaaaatatgcagaggggtgattctaggtcaaaaattgacctaaaatcacccctc 30776508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 30894518 - 30894478
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  30894518 ggggtgattctaggtcaaaaaatgatctaaaaccacccctc 30894478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 12648132 - 12648212
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||||||||||||| |||||||||||   |||||| |||||  ||| |||||||||||||||||||||||||    
T  12648132 ggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcaacgagtaaaagagaaagaaaacttaaagagaagttg 12648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 27097594 - 27097693
Alignment:
Q  12 aaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||   ||| |||||||| || ||||  |||||||||  ||| ||||||||||    
T  27097594 aaggggaaaaaagatgtagagggtgattctaggtcaaaaaatgacctaaaatcacccctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 27097693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29574828 - 29574914
Alignment:
Q  18 aaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaaga 101  Q
    ||||| ||||||  |||||||||||||||||||||| | |||||||||   |||||||||||| |||| ||||| ||||||||||||    
T  29574828 aaaaaggatgcacagggtgattctaggtcaaaaaatgatctaaaaccacccctcctcgacgagtgaaagagaaataaaacttaaaga 29574914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 10237401 - 10237498
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||||||| || ||||||||||||||||||||| | |||||||   ||| || ||||| ||| |||| || |||||||||||||||||||    
T  10237401 aaggggaaaaaagatgtagaggggtgattctaggtcaaaaattgacctaaaatcacctctactcgatgagtgaaagaggaagaaaacttaaagagaag 10237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 31788364 - 31788267
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaa---ccactcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||||   || |||||||| || |||| ||||||||||  ||| ||||||||||    
T  31788364 gggaaaaaagatgtagaggggtgattctaggtcaaaaaattacctaaaaccgcctctcctcgatgaacgaagaagaaagaaagtttagagagaagttg 31788267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 35220219 - 35220177
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctcga 73  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  35220219 ggggtgattctaggtcaaaaaataacctaaaaccacccctcga 35220177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1415473 - 1415421
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||||||||||    
T  1415473 gggaaaaaagatgtagaggggtgattctagatcaaaaaataacctaaaaccac 1415421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 4778664 - 4778604
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||| |||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  4778664 aagggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 4778604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 7646377 - 7646283
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| ||||||||||    
T  7646377 aaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 7646283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 3596275 - 3596361
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctacta 226  Q
    ||||||||| ||||||||| || || |||||||||||| ||| |||  ||||||||||| |||||| |||||||||| |||| ||||    
T  3596275 agacattgcataatttatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctccagccacta 3596361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 4099014 - 4098914
Alignment:
Q  12 aaggggaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| ||  |||||||||||||||||||||| ||||||| ||||   ||||||| ||  |||| |||||||||  ||| |||||||||    
T  4099014 aaggggaaaaaagatgtagatgggtgattctaggtcaaaaaatgacctaaagccacccttcctcgatgaaggaaagagaaagaaagtttagagagaagtt 4098915  T
Q  108 g 108  Q
    |    
T  4098914 g 4098914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7678072 - 7678126
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  7678072 aaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 7678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 19597784 - 19597738
Alignment:
Q  17 gaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaa 62  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19597784 gaaaaaagatgcaggagggtgattctaggtcaaaagataacctaaaa 19597738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 32448804 - 32448908
Alignment:
Q  7 gaaagaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagag 102  Q
    ||||||| ||| |||||||||||| ||||||||| ||||||||| ||| |||||||||||   |||||||| ||| |||| | ||  |||| ||||||||    
T  32448804 gaaagaaaggggaaaaagatgcagaggggtgattttaggtcaaataatgacctaaaaccacccctcctcgatgagtgaaagaaaagaaaaatttaaagag 32448903  T
Q  103 aagtt 107  Q
    |||||    
T  32448904 aagtt 32448908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 37994185 - 37994086
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||| || |||||| ||||||||||||||||| ||||| ||||||||||||   ||||||| ||  |||| ||||||||||| || |||||||||    
T  37994185 aaggggaaacaaaatgcagaggggtgattctaggtca-aaaatgacctaaaaccacccttcctcgatgattgaaagagaaagaaaacctagagagaagtt 37994087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 37876807 - 37876886
Alignment:
Q  32 gggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||||||| | |||||||||||   |||||||| || |||| ||||||||||  ||| ||||||||||    
T  37876807 gggtgattctaggtcaaaaattgacctaaaaccacccctcctcgatgaacgaagaagaaagaaagtttagagagaagttg 37876886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 3308850 - 3308790
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||||||||||||  ||||||||||||||||||||| | |||||||| ||| ||||    
T  3308850 aaggggaaaaaagatgcaaaggggtgattctaggtcaaaaattgacctaaaatcacccctc 3308790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 18107946 - 18108020
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaa 104  Q
    ||||||||||||||||||||| ||||||||||||   ||||| | ||  |||| |||||||||||||| ||||||    
T  18107946 ggtgattctaggtcaaaaaatgacctaaaaccaccattcctcaatgaatgaaagagaaagaaaacttagagagaa 18108020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 18763376 - 18763324
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||| || ||||||||||||||||||||||| || |||||||||    
T  18763376 gggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacataaaaccac 18763324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 19062543 - 19062595
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    |||||||| |||| || ||||||||||||| ||||||||||||||||||||||    
T  19062543 gggaaaaaggatgtagaggggtgattctagttcaaaaaataacctaaaaccac 19062595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 36943316 - 36943372
Alignment:
Q  16 ggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||| || | ||||||||||||||||||||| |||||||||||| ||||    
T  36943316 ggaaaaaagatgtagagtggtgattctaggtcaaaaaatgacctaaaaccacccctc 36943372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 43397329 - 43397407
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||||||||||| |||||||||||   || ||||| || |||| || |||||||  ||||||||||||||    
T  43397329 ggtgattctaggtcaaaaaatgacctaaaaccaccccttctcgatgaacgaagaaaaaagaaagtttaaagagaagttg 43397407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 1964379 - 1964454
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || |||||||| ||| ||| |||  |||||||||||||||||| ||||||||||    
T  1964379 gacattgcataatttatgcaggggccggggttcaaaccccggacaccccacttctccatatttaattgtgtgagct 1964454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 14955430 - 14955337
Alignment:
Q  16 ggaaaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    ||||||||||||||| ||| ||||||||||||||||| | || ||||   ||| |||||||| ||| |||| || |||||||||| ||||||||    
T  14955430 ggaaaaaagatgcagagggatgattctaggtcaaaaattgacttaaaatcacccctcctcgatgagtgaaagaggaagaaaactttaagagaag 14955337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 39635327 - 39635414
Alignment:
Q  143 acattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatattt-aaatgtgtgagcttcagctactaga 228  Q
    ||||||| |||| ||||| | || ||||||||||||||| |||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  39635327 acattgcataatatatgttggggtcggggttcgaactccagacactccacttctccacatttaaaatgtgtgatctccagccactaga 39635414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 5428084 - 5428156
Alignment:
Q  39 tctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||| |||||||||||||   |||||||| || ||||  |||||||||| ||| ||||||||||    
T  5428084 tctaggtcaaaaattaacctaaaaccacccctcctcgatgaacgaaggagaaagaaaatttagagagaagttg 5428156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7448152 - 7448099
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||||| ||||    
T  7448152 aaaaagatgtagaggggtgattctaggacaaaaaatgacctaaaaccacccctc 7448099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 24461327 - 24461290
Alignment:
Q  34 gtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  24461327 gtgattctaggtcaaaaaatgacctaaaaccacccctc 24461290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 40363101 - 40363040
Alignment:
Q  156 tatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    ||||||| || |||||||||||| || |||| || |||||||||||||||| ||||||||||    
T  40363101 tatgtaggggtcggggttcgaacccccgacactctacttctccatatttaattgtgtgagct 40363040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 42480244 - 42480216
Alignment:
Q  188 ccacttctccatatttaaatgtgtgagct 216  Q
    |||||||||||||||||||||||||||||    
T  42480244 ccacttctccatatttaaatgtgtgagct 42480216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 44543181 - 44543077
Alignment:
Q  7 gaaagaaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagaga 103  Q
    ||||||| |||||||||||||||| || ||||| ||||||||| |||||||||||| |||   ||||||| ||| |||| |||| ||||||||| |||||    
T  44543181 gaaagaaagggaaaaaagatgcagaggctgattttaggtcaaagaataacctaaaagcacccttcctcgatgagtgaaagagaaggaaaacttagagaga 44543082  T
Q  104 agttg 108  Q
    |||||    
T  44543081 agttg 44543077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 11462636 - 11462697
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctcg 72  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  11462636 aaggggaaaaaagatgcagaggggtgattctaggtcaaaaaataacctaaaatcacccctcg 11462697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 45415463 - 45415362
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||| || ||||||||||||| ||||||||| |||||||||||   ||||||||  | |||| ||||||||||  |||||||||||||    
T  45415463 aaggggaaaaaagatgtagaggggtgattctagatcaaaaaatgacctaaaaccacccctcctcgataaacgaagaagaaagaaagtttaaagagaagtt 45415364  T
Q  108 ga 109  Q
    ||    
T  45415363 ga 45415362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 49626814 - 49626714
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||   |||||||| ||| |||| |||| ||| ||||| |||||||||    
T  49626814 aaggggaaaaaagatgcagaggggtgattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaaggaacacttagagagaagtt 49626715  T
Q  108 g 108  Q
    |    
T  49626714 g 49626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 7001007 - 7000927
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagcttcag 220  Q
    ||||||| | |||||||| |||||| ||||||||||||||| ||||  ||||||||||| |||||| ||||||||||||||    
T  7001007 agacattacataatttatttagaggccggggttcgaactccggacaccccacttctccacatttaattgtgtgagcttcag 7000927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 34878482 - 34878559
Alignment:
Q  34 gtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||||||||| |||||||||||   |||||||| || ||||| |||||||||  ||||||||||||||    
T  34878482 gtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaagagaaagaaagtttaaagagaagttg 34878559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 45789474 - 45789415
Alignment:
Q  7 gaaagaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca 65  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  45789474 gaaagaaaggggaaaaagatgcagaggggtgattctaggtcaaaaaatgacctaaaacca 45789415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 12635068 - 12634972
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    |||||||||||||||  ||||||||| ||||||| ||||| ||||||||||||   ||||||||||| |||| ||||| ||||| || |||||||||    
T  12635068 gggaaaaaagatgcaaaggggtgattataggtcagaaaatgacctaaaaccacacatcctcgacgagtgaaagagaaaaaaaacatagagagaagtt 12634972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 26909914 - 26909828
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    |||||||| ||||||||| |||||  ||||||||||| | | |||  ||||||||||| |||||||||||||||||||||| |||||    
T  26909914 gacattgcataatttatgcagaggcgggggttcgaaccctggacaccccacttctccacatttaaatgtgtgagcttcagccactag 26909828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 37280728 - 37280813
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccgacaatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    |||||||| |||||||| ||| || |||| ||||||||||| ||  ||||||||||| |||||| |||||||||| |||| |||||    
T  37280728 gacattgcataatttatataggggtcgggattcgaactccggcaccccacttctccacatttaattgtgtgagctccagccactag 37280813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 32679311 - 32679387
Alignment:
Q  35 tgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||| |||||||||| || |||||||||   ||||||||||| |||| |||||||||||||| ||| ||||||    
T  32679311 tgattctatgtcaaaaaatgacataaaaccacccctcctcgacgagtgaaagagaaagaaaacttagagaaaagttg 32679387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 34528616 - 34528566
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactc 68  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  34528616 aaaaagatgcagaggggtgattctaggtcaaaaaatgacataaaaccactc 34528566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 48750093 - 48749997
Alignment:
Q  12 aaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaa---aaccactcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||||||||| || |||||||||||||||||  | ||||||    ||| |||||||| ||| |||| || ||||||||||| |||||||    
T  48750093 aaggggaaaaaagatgcaaggagtgattctaggtcaaaatttgacctaatatcacccctcctcgatgagtgaaagaggaagaaaacttagagagaag 48749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 10632719 - 10632807
Alignment:
Q  141 agacattgcttaatttatgtagagggcggggttcgaactcc-gaca-atccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    ||||||||| ||||||||| || || |||||||||||| || ||||   ||||||||||| ||||||||||||||||||| || |||||    
T  10632719 agacattgcataatttatgcaggggtcggggttcgaaccccggacacccccacttctccacatttaaatgtgtgagcttccgccactag 10632807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 18939231 - 18939171
Alignment:
Q  7 gaaagaaggggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||| ||| |||||||||||| | ||||||||||| ||||||||| ||||||||||||    
T  18939231 gaaagaaaggggaaaaagatgcagagaggtgattctagatcaaaaaatgacctaaaaccac 18939171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 1742165 - 1742130
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1742165 ggggtgattctaggtcaaaaaatgacctaaaaccac 1742130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 7836957 - 7837054
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||||||  | ||||||||||||| ||||||||| ||||||||||||   ||||||| || ||||| ||||||||   ||| ||||||||||    
T  7836957 gggaaaaaagatgtcgaggggtgattctagatcaaaaaatgacctaaaaccacccttcctcgatgaacgaaagagaaagaaggtttagagagaagttg 7837054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 31124682 - 31124607
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| || || ||||||||||||||| || |  ||||||||||| |||||| ||||||||||    
T  31124682 gacattgcataatttatgcaggggccggggttcgaactccggataccccacttctccacatttaattgtgtgagct 31124607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 21686772 - 21686692
Alignment:
Q  16 ggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaa 93  Q
    |||||||||||| || | |||||||||| ||||||||| |||||||| ||   |||||||| || ||||| ||||||||||    
T  21686772 ggaaaaaagatgtagagagtgattctagatcaaaaaatgacctaaaatcatctctcctcgatgaacgaaagagaaagaaaa 21686692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 15836075 - 15836042
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  15836075 ggtgattctaggtcaaaaaatgacctaaaaccac 15836042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 24910519 - 24910450
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtga 213  Q
    ||||| ||||||||| || || | |||||||||| ||| ||| ||||||||||||||||||| |||||||    
T  24910519 attgcataatttatgcaggggtcagggttcgaaccccggacactccacttctccatatttaattgtgtga 24910450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 31692646 - 31692733
Alignment:
Q  7 gaaagaaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaaga 90  Q
    ||||||| || |||||| |||||| |||||||||| |||||||||||| |||||||| |||   ||||||| ||| |||| |||||||    
T  31692646 gaaagaaaggaaaaaaaaatgcagaggggtgattcaaggtcaaaaaatgacctaaaatcacacatcctcgatgagtgaaagagaaaga 31692733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 32394896 - 32394843
Alignment:
Q  19 aaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||| ||| |||||||| |||||||||| |||||||||||| ||||    
T  32394896 aaaaagatgcagagggatgattctaagtcaaaaaatgacctaaaaccacccctc 32394843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 42727006 - 42727055
Alignment:
Q  167 cggggttcgaactccgacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||||||||| ||||  |||||| |||||||||||||||| |||||    
T  42727006 cggggttcgaactctgacatcccacttttccatatttaaatgtgcgagct 42727055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 11860069 - 11860141
Alignment:
Q  143 acattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgag 214  Q
    ||||||| |||||||| ||| || |||||||||||| || ||||  ||||||||||| |||||| ||||||||    
T  11860069 acattgcataatttatataggggtcggggttcgaaccccggacaccccacttctccacatttaattgtgtgag 11860141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 24875023 - 24875083
Alignment:
Q  168 ggggttcgaac-tccgacaatccacttctccatatttaaatgtgtgagcttcagctactag 227  Q
    ||||||||||| || ||||  |||||||||||||||||| |||||||||| |||| |||||    
T  24875023 ggggttcgaacctcggacaccccacttctccatatttaattgtgtgagctccagccactag 24875083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 38597695 - 38597598
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||   |||||||| || ||||  |||||||||  ||| ||||||||||    
T  38597695 gggaaaaaagatgtagaggggtgattctaggtcaaaaaataacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 38597598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 39567196 - 39567099
Alignment:
Q  12 aaggggaaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaaccac---tcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||| |||||||||||| || |||||||||||||||||| | |||||||| |||   ||||||| ||| |||| || |||||||||||||||||||    
T  39567196 aagggggaaaaagatgcagaggcgtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaagaaaacttaaagagaag 39567099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 14211126 - 14211037
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca--ctcctcgacgagcgaaaaagaaagaaaacttaaagagaag 105  Q
    |||||||||||| ||||||||||||||||||||| | |||||||| ||  |||||||| ||| |||| || ||||||||||| |||||||    
T  14211126 aaaaagatgcagaggggtgattctaggtcaaaaattgacctaaaatcaccctcctcgatgagtgaaagaggaagaaaacttagagagaag 14211037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 13007126 - 13007029
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    |||||||||| || || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| ||||||||||    
T  13007126 gggaaaaaaggtgtagaggggtgattctaggtcaaaaaatgacctaaaaccacctctcctcgatgaacgaaggagaaagaaagtttagagagaagttg 13007029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 9113916 - 9114012
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaacttaaagagaagtt 107  Q
    ||||||||||||| || ||||||||||||||| ||||||| |||||||   ||| |||||||| || ||||| |||||||||  ||| |||||||||    
T  9113916 gggaaaaaagatgtagaggggtgattctaggttaaaaaatgacctaaaatcacccctcctcgatgaacgaaagagaaagaaagtttagagagaagtt 9114012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 10332747 - 10332840
Alignment:
Q  18 aaaaaagatgcagggg-gtgattctaggtcaaaaaataacctaaaaccactcc--tcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||||||||||| || |||||||||  ||||||||| || ||||||||| |   |||||||| |||| |||||||||||||| ||||||||||    
T  10332747 aaaaaagatgcagaggtgtgattctaaatcaaaaaatgacttaaaaccaccctgttcgacgagtgaaagagaaagaaaacttatagagaagttg 10332840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 34945322 - 34945268
Alignment:
Q  12 aaggggaaaaaagatgcagg-gggtgattctaggtcaaaaaataacctaaaacca 65  Q
    |||||||||||||||| ||  |||||||||||||||||||||| |||||||||||    
T  34945322 aaggggaaaaaagatgtagaagggtgattctaggtcaaaaaatgacctaaaacca 34945268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31391952 - 31392005
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||| ||||    
T  31391952 aaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctc 31392005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 6012326 - 6012386
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||| |||||||||| || |||||||||||| |||||||||| |||||||||||| ||||    
T  6012326 aagggaaaaaaagatgtagaggggtgattctatgtcaaaaaatgacctaaaaccacccctc 6012386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 2979504 - 2979589
Alignment:
Q  16 ggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaa---accactcctcgacgagcgaaaaagaaagaaaactta 97  Q
    ||||||||||||||| ||||||||| ||||||||||| | |||||||   ||| |||||||| ||| |||| || |||||||||||    
T  2979504 ggaaaaaagatgcagaggggtgattataggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaagaaaactta 2979589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 23155919 - 23155994
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| ||||| || ||||||||||||| |||  | ||||||||| |||| ||||||||||||    
T  23155919 gacattgcataatttatgcagaggccgaggttcgaactccgaacacccaacttctccacattttaatgtgtgagct 23155994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 37553969 - 37553894
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| ||||| || |||||||||||| ||||  |||||| |||| |||||| ||||||||||    
T  37553969 gacattgcataatttatgcagaggccgaggttcgaactccagacaccccacttatccacatttaattgtgtgagct 37553894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 37684590 - 37684515
Alignment:
Q  142 gacattgcttaatttatgtagagggcggggttcgaactcc-gacaatccacttctccatatttaaatgtgtgagct 216  Q
    |||||||| ||||||||| ||||| || |||||||||||| ||||  |||||| |||| |||||| ||||||||||    
T  37684590 gacattgcataatttatgcagaggtcgaggttcgaactccagacaccccacttatccacatttaattgtgtgagct 37684515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 13421842 - 13421792
Alignment:
Q  12 aaggggaaaaaagatgcagggggtgattctaggtcaaaaaataacctaaaa 62  Q
    |||||| ||||||||| || ||||||||||| |||||||||| ||||||||    
T  13421842 aagggggaaaaagatgtagagggtgattctatgtcaaaaaatgacctaaaa 13421792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 38007251 - 38007198
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| || |||||||||| |||||||||||| |||||||||||| ||||    
T  38007251 aaaaagatgtagaggggtgattcgaggtcaaaaaatgacctaaaaccacccctc 38007198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 24456206 - 24456294
Alignment:
Q  133 aattggtaagacattgcttaatttatgtagagggcggggttcgaactccgacaatccacttctccatatttaaatgtgtgagcttcagc 221  Q
    |||||| | |||||||| ||||||||| || || ||| |||||||| |||   | ||||||||||| | ||||||||||||||| ||||    
T  24456206 aattggcaggacattgcataatttatgcaggggtcggagttcgaaccccggacacccacttctccacagttaaatgtgtgagctccagc 24456294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 33018566 - 33018483
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagcttcagctactaga 228  Q
    ||||| ||||||||| || || ||||||||||||| || |||  ||||||||||| ||||| ||||||||||| |||| ||||||    
T  33018566 attgcataatttatgcag-ggtcggggttcgaacttcggacaccccacttctccacatttatatgtgtgagctccagccactaga 33018483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 1242 - 1144
Alignment:
Q  15 gggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    ||||||||||| | || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||| ||| |||||||||||    
T  1242 gggaaaaaagaagtagaggggtgattctaggtcaaaaaatgacctaaaaccacctctcctcgatgaacgaaggagaaagaaaatttagagagaagttga 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 58273 - 58367
Alignment:
Q  18 aaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttg 108  Q
    ||||| ||||||| ||||||||| ||||||||||||| |||||||||||   |||||||||||| |||| | || ||||||||| ||||||||||    
T  58273 aaaaaggatgcagaggggtgattttaggtcaaaaaatgacctaaaaccacccctcctcgacgagtgaaagaaaacgaaaacttagagagaagttg 58367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 2160 - 2220
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||||||||||||| ||||||||| || ||||||||||||||    
T  2160 aaggggaaaaaagatgtagaggggtgattctagatcaaaaaatgacttaaaaccactcctc 2220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 15386 - 15292
Alignment:
Q  19 aaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||||    
T  15386 aaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgaagaacgaaggagaaagaaagtttagagagaagttga 15292  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 93001 - 92941
Alignment:
Q  12 aaggggaaaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||| ||||||||||||| | || |||||||||||||||||||||||||||||||| ||||    
T  93001 aaggagaaaaaagatgcacgaggatgattctaggtcaaaaaataacctaaaaccacccctc 92941  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 32936 - 32996
Alignment:
Q  12 aaggggaaaaaagatgcag-ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||| |||||||| || |||||||||||| |||||||||| |||||||||||||||||    
T  32936 aaggggacaaaagatgtagaggggtgattctatgtcaaaaaatgacctaaaaccactcctc 32996  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 72074 - 72153
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaacca---ctcctcgacgagcgaaaaagaaagaaaacttaaagagaagttga 109  Q
    ||||||||||||||||||||| |||||||||||   |||||||| || ||||  |||||||||  ||| |||||||||||    
T  72074 ggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaagaaagtttagagagaagttga 72153  T

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Target: scaffold0246 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 24409 - 24481
Alignment:
Q  145 attgcttaatttatgtagagggcggggttcgaactccg-acaatccacttctccatatttaaatgtgtgagct 216  Q
    ||||| ||||||||| || || |||||||||||| ||| ||| ||||||||| || |||||||||||||||||    
T  24409 attgcataatttatgcaggggccggggttcgaaccccggacactccacttcttcacatttaaatgtgtgagct 24481  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15029 - 15075
Alignment:
Q  15 gggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaa 60  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||    
T  15029 gggaaaaaagatgtagagtggtgattctaggtcaaaaaataacctaa 15075  T

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Target: scaffold0888 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1862 - 1911
Alignment:
Q  12 aaggggaaaaaagatgcaggg-ggtgattctaggtcaaaaaataacctaa 60  Q
    ||||||||||||||||||| | ||||||||||||||||||| | ||||||    
T  1862 aaggggaaaaaagatgcagagaggtgattctaggtcaaaaattgacctaa 1911  T

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Target: scaffold0492 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 12795 - 12762
Alignment:
Q  33 ggtgattctaggtcaaaaaataacctaaaaccac 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  12795 ggtgattctaggtcaaaaaatgacctaaaaccac 12762  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 23401 - 23462
Alignment:
Q  156 tatgtagagggcggggttcgaactccgacaatccacttctccatatttaaa-tgtgtgagct 216  Q
    |||| ||||| |||||||||||| | |||| |||||||||||||| ||||| ||||||||||    
T  23401 tatgcagaggccggggttcgaacccggacactccacttctccataattaaattgtgtgagct 23462  T

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Target: scaffold0634 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 8395 - 8355
Alignment:
Q  31 ggggtgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    ||||||||| |||||||||||||||| ||||||||| ||||    
T  8395 ggggtgattataggtcaaaaaataacttaaaaccacccctc 8355  T

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Target: scaffold0088 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 50687 - 50627
Alignment:
Q  12 aaggggaaaaaagatgcaggggg-tgattctaggtcaaaaaataacctaaaaccactcctc 71  Q
    |||||||||||||||| || ||| ||||||||||||||||| | |||||||| ||| ||||    
T  50687 aaggggaaaaaagatgtagagggatgattctaggtcaaaaagtgacctaaaatcacccctc 50627  T

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