View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_high_18 (Length: 351)
Name: NF6819A_high_18
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 45 - 336
Target Start/End: Complemental strand, 471629 - 471338
Alignment:
| Q |
45 |
aaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccaaaggaaagccatggttggaaccttccaaatcatcttcaacatttccatcaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
471629 |
aaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccagaggaaagccatggttggaaccttccaaatcatcttcaacatttccatcag |
471530 |
T |
|
| Q |
145 |
caatcaaaggtttaatctttttgtacttgatccaaaagcaaccaatacacaaaaccattctatccacagactgaatcaagaacaaaactatgcagaaatt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
471529 |
caatcaaaggtttaatctttttgtacttgatccaaaagcaaccaagacacaaaaccattctatccacagactgaatcaagaacaaaactatgcagaaatt |
471430 |
T |
|
| Q |
245 |
tgaaagatattgaattgttgatgcaatataatcaactctaaacctcaaccaactaacataaacctcatgaaacaaccctttaatctcccaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
471429 |
tgaaagatattgaattgttgatgcaatataatcaactctaaacctcaaccaactaacataaacctcatgaaacaaccctttaatctcccaat |
471338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University