View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_high_38 (Length: 247)
Name: NF6819A_high_38
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 29675149 - 29674938
Alignment:
| Q |
20 |
aatatccaaagtttcaaatttcattcctaccaaacttcgcatttgattcaaaataaagaaaaatttgtcttgtatttccatcatattcatcatcaatact |
119 |
Q |
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| T |
29675149 |
aatattcaaagtttcaaattttattcctagcaaacttcacatttgattcaaaatgaagaaaaatttgtctcgtatttccatcatattcatcatcaatact |
29675050 |
T |
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| Q |
120 |
gaagagggcttattagctcctgagaatggtaggagtcattttcaacataagcatctttttcactacattctcttcaacattaatacatgtgccttgtcct |
219 |
Q |
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| T |
29675049 |
gaaaagggcttattagctcctgagaatggtaggagtcattttcaacataagcatcattttaactacattctcttcaacattaatacatgccccttgtcct |
29674950 |
T |
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| Q |
220 |
tccgttgatgtc |
231 |
Q |
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| T |
29674949 |
tccgttgatgtc |
29674938 |
T |
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