View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_high_46 (Length: 213)
Name: NF6819A_high_46
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 29467283 - 29467152
Alignment:
| Q |
60 |
aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467283 |
aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt |
29467184 |
T |
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| Q |
160 |
gtcgaaggattaagaaacgattgagggaattt |
191 |
Q |
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| T |
29467183 |
gtcgaaggattaagaaacgattgagggaattt |
29467152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 29452809 - 29452676
Alignment:
| Q |
60 |
aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt |
159 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29452809 |
aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt |
29452710 |
T |
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| Q |
160 |
gtcgaaggattaagaaacgattgagggaattttg |
193 |
Q |
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| T |
29452709 |
gtcgaaggattaaggaacgattgagggaattttg |
29452676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 29423907 - 29424035
Alignment:
| Q |
62 |
cagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgt |
161 |
Q |
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| T |
29423907 |
cagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttgtgt |
29424006 |
T |
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| Q |
162 |
cgaaggattaagaaacgattgagggaatt |
190 |
Q |
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| T |
29424007 |
cgaaggattaaggaacgattgaaggaatt |
29424035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 29442789 - 29442684
Alignment:
| Q |
88 |
tgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgaggga |
187 |
Q |
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||||||||| |||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
29442789 |
tgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaa |
29442690 |
T |
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| Q |
188 |
attttg |
193 |
Q |
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|||||| |
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| T |
29442689 |
attttg |
29442684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 14551013 - 14551143
Alignment:
| Q |
62 |
cagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgt |
161 |
Q |
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||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
14551013 |
cagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttgtgt |
14551112 |
T |
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| Q |
162 |
cgaaggattaagaaacgattgagggaatttt |
192 |
Q |
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|||||||||||| ||| |||||||||||||| |
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| T |
14551113 |
cgaaggattaaggaacaattgagggaatttt |
14551143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
| Q |
137 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
192 |
Q |
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||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||| |
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| T |
8572882 |
gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt |
8572827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
| Q |
140 |
ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
192 |
Q |
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|||||||| |||| | |||||||||||||||||| | || ||||||||||||| |
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| T |
9292699 |
ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt |
9292751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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