View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_105 (Length: 270)
Name: NF6819A_low_105
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_105 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 26930477 - 26930232
Alignment:
| Q |
25 |
tgaccttggaaatataacaaggatgatttttgacataacatcaattttgtcgctgtaagcagtaacttttgttaaaatatcattggaccaaatttatata |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26930477 |
tgaccttggaaatataacaaggatgatttttgacataacatcaattttgccgctgtaagcagtaacttttgttaaaatatcattggaccaaatttatata |
26930378 |
T |
|
| Q |
125 |
acaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaatgggtttaccataaaattatgttggggcatctctggctgctacaact |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26930377 |
acaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaatgggtttaccataaaattatgttggggcatctctggctgctacaatt |
26930278 |
T |
|
| Q |
225 |
gtacagtgaatatgtttgacacattcatttcttgttattttgatga |
270 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
26930277 |
gtacagagaatatgtttggcacattcatatcttgttattttgatga |
26930232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 26963408 - 26963226
Alignment:
| Q |
21 |
aatttgaccttggaaatat-aacaaggatgatttttgacataacatcaattttgtcgctgtaagcagtaacttttgttaaaatatcattggaccaaattt |
119 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26963408 |
aatttgacattggaaatattaactaggatgatttttgacatgacatcaattttgccgctatacgcagtaacttttgttaaaatatcattggaccgaattt |
26963309 |
T |
|
| Q |
120 |
atataacaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaat-gggtttaccataaaattatgttg |
201 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |||||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
26963308 |
atataacaatcttttgaaggccacattgaatgttttgaaaatatttcgagtataaaaatggggtttatcataaaattatgttg |
26963226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 26940646 - 26940843
Alignment:
| Q |
21 |
aatttgaccttggaaatat-aacaaggatgatttttgacataacatcaattttgtcgctgtaagcagtaacttttgttaaaatatcattggaccaaattt |
119 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||| |||||||||||| | || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26940646 |
aatttgaccttggaaatattaactatgatgatttttgacatgacatcaattttgcctctatgcgcagtaacttttgttaaaatatcattggaccaaattt |
26940745 |
T |
|
| Q |
120 |
atataacaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaat-gggtttaccataaaattatgttggggcatctctggctgct |
218 |
Q |
| |
|
||| || |||||||||||||| |||||||| |||||| ||| |||||||||| | ||| ||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
26940746 |
atacaaaaatcttttgagggccacattgaa--ttttgagaatatttcgagtataaaaatggggtttatcataaaattatgttgcggcatctttggctgct |
26940843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 36673380 - 36673165
Alignment:
| Q |
21 |
aatttgaccttggaaatat-aacaaggatgatttttg------acataacatcaattttgtcgctgtaagcagtaacttttgttaaaatatcattggacc |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||| |||||||||| | | ||||||||| || |||||||||||||||| |||| |
|
|
| T |
36673380 |
aatttgaccttggaaatattaacaaggat-atttttggtcagtacatgacatcaatttggcctgtgtaagcagatacatttgttaaaatatcatccgacc |
36673282 |
T |
|
| Q |
114 |
aaatttatataacaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaat-gggtttaccataaaattatgttggggcatctctg |
212 |
Q |
| |
|
|||||||||| | |||||||||||||| | |||||| |||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36673281 |
aaatttatatcataatcttttgagggccagattgaaggttttgaaaatctttcaaatatcaaaatggggtttaccataaaattatgttggggcatctctg |
36673182 |
T |
|
| Q |
213 |
gctgctacaactgtaca |
229 |
Q |
| |
|
||| ||| || |||||| |
|
|
| T |
36673181 |
gcttctataattgtaca |
36673165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 27564679 - 27564556
Alignment:
| Q |
79 |
gtaagcagtaactttt-gttaaaatatcattggaccaaatttatataacaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaa |
177 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||| |||||||||||| |||| |||||||| | ||||||| || ||||||||||| |||||||| || |
|
|
| T |
27564679 |
gtaagcagtaattttttgttaaaatatcagtggacgaaatttatataataatc--ttgagggccatattgaattttatgaaaatcttt-gagtatcaaaa |
27564583 |
T |
|
| Q |
178 |
t-gggtttaccataaaattatgttggg |
203 |
Q |
| |
|
| ||||||| |||||||||| |||||| |
|
|
| T |
27564582 |
tggggtttatcataaaattacgttggg |
27564556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 29413947 - 29413751
Alignment:
| Q |
77 |
ctgtaagcagtaacttttgttaaaatatcattggaccaaatttatataacaatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcaca |
176 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
29413947 |
ctgtatgcagtaatttttgttaaaatatcattggaccaactctatttaataatcttttgagggacaaattgaatgttttgaaaatctttcgagtatctaa |
29413848 |
T |
|
| Q |
177 |
at-gggtttaccataaaattatgttggggcatctctggctgctacaactgtacagtgaatatgtttgacac---attcatttcttgttattttgatga |
270 |
Q |
| |
|
|| |||||||||||||| |||| | |||||||||| ||||||| || ||||||| ||| || |||| ||| ||||||||||||||||| ||||| |
|
|
| T |
29413847 |
atggggtttaccataaagttatagtagggcatctct-gctgctataattgtacagagaacatctttggcacgttgttcatttcttgttatttcgatga |
29413751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 24202133 - 24202236
Alignment:
| Q |
127 |
aatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgctacaactg |
225 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||| ||||||| |||||| |||||| |||||| |||||||||||||||||||||||| || || |
|
|
| T |
24202133 |
aatcttttgagggacaaataaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctgctagaattg |
24202232 |
T |
|
| Q |
226 |
taca |
229 |
Q |
| |
|
|||| |
|
|
| T |
24202233 |
taca |
24202236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University