View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_108 (Length: 270)

Name: NF6819A_low_108
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_108
NF6819A_low_108
[»] chr8 (2 HSPs)
chr8 (1-146)||(5370525-5370670)
chr8 (185-261)||(5370406-5370482)
[»] chr7 (3 HSPs)
chr7 (1-146)||(4561580-4561725)
chr7 (185-261)||(4561772-4561848)
chr7 (194-262)||(1101734-1101801)
[»] chr2 (4 HSPs)
chr2 (1-146)||(14953395-14953540)
chr2 (185-261)||(14953277-14953353)
chr2 (195-262)||(40833270-40833336)
chr2 (189-262)||(14002214-14002287)
[»] chr3 (2 HSPs)
chr3 (191-262)||(46697191-46697262)
chr3 (4-41)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (197-262)||(23885849-23885914)
[»] chr4 (1 HSPs)
chr4 (194-262)||(56398469-56398536)
[»] chr1 (1 HSPs)
chr1 (189-262)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (222-254)||(37606037-37606069)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 5370670 - 5370525
Alignment:
Q  1 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  5370670 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtg 5370571  T
Q  101 agagagacagtgggtgccgggagggggtgagagaatgtcacgtaag 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  5370570 agagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 5370525  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 5370482 - 5370406
Alignment:
Q  185 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 261  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5370482 gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 5370406  T

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Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4561580 - 4561725
Alignment:
Q  1 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  4561580 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtg 4561679  T
Q  101 agagagacagtgggtgccgggagggggtgagagaatgtcacgtaag 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  4561680 agagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 4561725  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 4561772 - 4561848
Alignment:
Q  185 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4561772 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 4561848  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 1101734 - 1101801
Alignment:
Q  194 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||| |||||| |||||| |||||| |||||||||| || ||||  |||||||||||||||||| ||||    
T  1101734 tgtacaaatactgtataa-tatacgatgaacagtgtatgatgtctaatttgtgtttgtattttggtgtc 1101801  T

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Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14953540 - 14953395
Alignment:
Q  1 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  14953540 aacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtg 14953441  T
Q  101 agagagacagtgggtgccgggagggggtgagagaatgtcacgtaag 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  14953440 agagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 14953395  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 14953353 - 14953277
Alignment:
Q  185 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14953353 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 14953277  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 40833270 - 40833336
Alignment:
Q  195 gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| |||||||||    
T  40833270 gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttgatgtc 40833336  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 14002214 - 14002287
Alignment:
Q  189 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||| ||||| |||||||||||||||||  | ||||  |||||| ||||  |||||| ||||||||||||||||    
T  14002214 actggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtc 14002287  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 46697191 - 46697262
Alignment:
Q  191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46697191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgtc 46697262  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
Q  4 ttgttggtggtggtcagatctaagctgatcggagaaga 41  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46697010 ttgttggtggtggtcagatctgagctgatcggagaaga 46697047  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 23885914 - 23885849
Alignment:
Q  197 ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||||||| |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  23885914 ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 23885849  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 56398469 - 56398536
Alignment:
Q  194 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||| |||||| |||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  56398469 tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 56398536  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 6284650 - 6284577
Alignment:
Q  189 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 262  Q
    |||||| ||| ||||||||||||| ||||  |||| | |||||| ||||  |||||||||||||||||||||||    
T  6284650 actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttgatgtc 6284577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
Q  222 aacagtgtttggtgtcatatttgtgtttgtatt 254  Q
    |||||||| ||||||||||||||||||||||||    
T  37606037 aacagtgtatggtgtcatatttgtgtttgtatt 37606069  T

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