View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_124 (Length: 257)
Name: NF6819A_low_124
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_124 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32913053 - 32913292
Alignment:
| Q |
1 |
gattccatgccataattttttcatgcattcacatagtcacgacgttaatggctgtccggtcaagatcggacggttcagaaaaatcagatttaatttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913053 |
gattccatgccataattttttcatgcattcacatagtcacgactttaatggctgtccggtcaagatcggacggttcagaaaaatcagatttaatttttct |
32913152 |
T |
|
| Q |
101 |
aaaaatacggaacttaaattatagtcatccgatcttgacgtgtgattgcatgtaagctaagcgtgacgatgatttataacttcgatctttgtaaagaaat |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913153 |
aaaaatacagaacttaaattatagtcatccgatcttgacgtgtgattgcatgtaagctaagtgtgacgatgatttataacttcgatctttgtaaagaaat |
32913252 |
T |
|
| Q |
201 |
attgtacactataaaatgttttcatgcaataattgcttccat |
242 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32913253 |
attgtacactat--aatgttttcatgcaataattgcttccat |
32913292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University