View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_125 (Length: 257)
Name: NF6819A_low_125
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_125 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5035466 - 5035722
Alignment:
| Q |
1 |
gttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgtaatttaa |
100 |
Q |
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| T |
5035466 |
gttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgtaatttaa |
5035565 |
T |
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| Q |
101 |
taacttttatagcagtgtttgtgaaataaaaaacttacaaagcacatatattaaagannnnnnnnaaggatatctattaaagaattaaaaaattcacttc |
200 |
Q |
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| T |
5035566 |
taacttttataacagagtttgtgaaataaaaaacttacaaagcacatatattaaagattttttttaaggatatctattaaagaattaaaaaattcacttc |
5035665 |
T |
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| Q |
201 |
acaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtgga |
257 |
Q |
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| T |
5035666 |
acaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtgga |
5035722 |
T |
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