View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_13 (Length: 445)

Name: NF6819A_low_13
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_13
NF6819A_low_13
[»] chr3 (4 HSPs)
chr3 (23-445)||(46239900-46240322)
chr3 (26-444)||(23541295-23541713)
chr3 (31-241)||(30038202-30038412)
chr3 (62-247)||(34584674-34584859)
[»] chr7 (4 HSPs)
chr7 (23-403)||(3437157-3437537)
chr7 (60-226)||(14798952-14799118)
chr7 (60-226)||(15245944-15246110)
chr7 (412-442)||(3437534-3437564)
[»] chr4 (2 HSPs)
chr4 (23-139)||(6869027-6869143)
chr4 (72-250)||(11318291-11318469)
[»] chr5 (1 HSPs)
chr5 (30-247)||(29878125-29878342)
[»] chr8 (1 HSPs)
chr8 (30-247)||(3921266-3921483)
[»] scaffold0140 (1 HSPs)
scaffold0140 (84-184)||(40053-40153)
[»] scaffold0121 (1 HSPs)
scaffold0121 (72-250)||(43429-43607)
[»] chr2 (1 HSPs)
chr2 (72-250)||(18131561-18131739)
[»] chr1 (1 HSPs)
chr1 (62-247)||(30964560-30964745)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 23 - 445
Target Start/End: Complemental strand, 46240322 - 46239900
Alignment:
Q  23 caactccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240322 caactccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatg 46240223  T
Q  123 agtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaa 222  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46240222 agcagttgacccccatactttgtctttagatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaa 46240123  T
Q  223 agtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcata 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||    
T  46240122 agtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcata 46240023  T
Q  323 tctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgca 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46240022 tctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccactgca 46239923  T
Q  423 tgattcgtcctcatgtcatccat 445  Q
    |||||||||||||||||||||||    
T  46239922 tgattcgtcctcatgtcatccat 46239900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 444
Target Start/End: Complemental strand, 23541713 - 23541295
Alignment:
Q  26 ctccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagt 125  Q
    |||||||||||| ||||||||| |||| ||||  ||||| || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || ||     
T  23541713 ctccatgaaccatttccagctttccctacactttgtttctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattaga 23541614  T
Q  126 agttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagt 225  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| |||||  | || ||||| || |||||||||||||||||||    
T  23541613 agttgacccccatactttgtctttaaatgacatccatctaccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagt 23541514  T
Q  226 aaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatct 325  Q
    | ||||| |||||||||||||| | |  |||   ||| ||||| ||| | ||  ||||  | ||||||| |  ||| ||||||||||| |||||||| ||    
T  23541513 agaaagaaccaaacctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacct 23541414  T
Q  326 ccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatga 425  Q
    ||  ||||| |  ||||| | |||||||||||| ||||||||  ||||||| ||||||||||| ||||| ||||||||  | || ||||||||||||||     
T  23541413 ccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctacccattgtaatacccactgcatgg 23541314  T
Q  426 ttcgtcctcatgtcatcca 444  Q
    || ||||||||||||||||    
T  23541313 tttgtcctcatgtcatcca 23541295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 30038202 - 30038412
Alignment:
Q  31 tgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttg 130  Q
    ||||||| |||||  || || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  |||||    
T  30038202 tgaaccatttccaagtttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttg 30038301  T
Q  131 acccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaa 230  Q
    |||||| ||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || ||||||    
T  30038302 acccccgtatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaa 30038401  T
Q  231 gatccaaacct 241  Q
    || ||||||||    
T  30038402 gacccaaacct 30038412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 34584859 - 34584674
Alignment:
Q  62 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 161  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  34584859 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 34584760  T
Q  162 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 247  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  34584759 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 34584674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 3437157 - 3437537
Alignment:
Q  23 caactccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437157 caactccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatg 3437256  T
Q  123 agtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaa 222  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3437257 agcagttgaccaccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaa 3437356  T
Q  223 agtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcata 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3437357 agtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcata 3437456  T
Q  323 tctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437457 tctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 3437537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 14798952 - 14799118
Alignment:
Q  60 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 159  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  160 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 226  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  14799052 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 14799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 15245944 - 15246110
Alignment:
Q  60 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 159  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  160 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 226  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  15246044 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 15246110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Original strand, 3437534 - 3437564
Alignment:
Q  412 tacccactgcatgattcgtcctcatgtcatc 442  Q
    |||||||||||||||||||||||||||||||    
T  3437534 tacccactgcatgattcgtcctcatgtcatc 3437564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 6869143 - 6869027
Alignment:
Q  23 caactccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatg 122  Q
    ||||| ||||||||| ||||| ||| || |||||||||||||||| |  ||||| || || |||||||||||||||||||||||||| || ||||||||     
T  6869143 caactgcatgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatc 6869044  T
Q  123 agtagttgacccccata 139  Q
    |  ||||| ||||||||    
T  6869043 aacagttggcccccata 6869027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 11318291 - 11318469
Alignment:
Q  72 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 171  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  172 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 250  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  11318391 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 11318469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 29878342 - 29878125
Alignment:
Q  30 atgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagtt 129  Q
    |||||||| ||||| ||| || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||    
T  29878342 atgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagtt 29878243  T
Q  130 gacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaa 229  Q
    | ||||||||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||    
T  29878242 gccccccatatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaa 29878143  T
Q  230 agatccaaacctgggttg 247  Q
    ||| |||||||| |||||    
T  29878142 agacccaaaccttggttg 29878125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 3921266 - 3921483
Alignment:
Q  30 atgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagtt 129  Q
    |||||||| ||||| ||| || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||    
T  3921266 atgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagtt 3921365  T
Q  130 gacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaa 229  Q
    | ||||| ||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||    
T  3921366 gtcccccttatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaa 3921465  T
Q  230 agatccaaacctgggttg 247  Q
    ||| |||||||| |||||    
T  3921466 agacccaaaccttggttg 3921483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 40053 - 40153
Alignment:
Q  84 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac 183  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac 40152  T
Q  184 a 184  Q
    |    
T  40153 a 40153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 43607 - 43429
Alignment:
Q  72 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 171  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  172 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 250  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  43507 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 43429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 18131561 - 18131739
Alignment:
Q  72 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 171  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  172 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 250  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  18131661 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 18131739  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 30964745 - 30964560
Alignment:
Q  62 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 161  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  30964745 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 30964646  T
Q  162 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 247  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  30964645 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 30964560  T

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