View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_137 (Length: 251)
Name: NF6819A_low_137
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_137 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 1831845 - 1831657
Alignment:
| Q |
39 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
137 |
Q |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
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| Q |
138 |
atatttgtagcatatttcttctggtgcaccactcaaccttatgaagttttagtgaattccatcccaaggaaatattttaactttcccaa |
226 |
Q |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaa |
1831657 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
94 |
gtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactcaaccttatgaagttttagtgaa |
193 |
Q |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
194 |
ttccatcccaaggaaatattttaactttcc |
223 |
Q |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 9817073 - 9816970
Alignment:
| Q |
123 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactcaaccttatgaagttttagtgaattccatcccaaggaaatattttaactttc |
222 |
Q |
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||||||||||| ||||||| | | ||||||||||||| ||||| |||| | || | ||| |||||||||||||| || |||| ||||||| ||||| ||| |
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| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
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| Q |
223 |
ccaa |
226 |
Q |
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|||| |
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| T |
9816973 |
ccaa |
9816970 |
T |
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