View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_138 (Length: 251)
Name: NF6819A_low_138
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_138 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44151683 - 44151446
Alignment:
| Q |
1 |
agaaggaatgccaattaaaccaacaatttgaatgaagatgaacaagaggtaaatatgcctcgaaatggtgatccaatttctgaagtgaaattactatcaa |
100 |
Q |
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| T |
44151683 |
agaaggaatgccaattaaaccaacaatttgaatgaagatgaacaagaggtaaatatacctcgaaatgttgatccaattcctgaagtgaaattaccatcaa |
44151584 |
T |
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| Q |
101 |
atcttgtcattagtcgaattgaaaatgacttgtgacaagtccatcgattcgaaggacatatgtcactatatatccccatggattaccaccatgattcatt |
200 |
Q |
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| T |
44151583 |
atcttgtcattagtcgaattgaaaatgacttgtgacaagtccatcgatttgaaggacatatgtcactatatatccctatggattaccaccatgattcatt |
44151484 |
T |
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| Q |
201 |
cttcaattgaaatctaaatacagataccgatgtccatc |
238 |
Q |
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| T |
44151483 |
cttcaattgaaatctaaatacagataccgttgtccatc |
44151446 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 27804684 - 27804631
Alignment:
| Q |
25 |
aatttgaatgaagatgaacaagaggtaaatatgcctcgaaatggtgatccaatt |
78 |
Q |
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| T |
27804684 |
aatttgagtgaagatgaacaattgataaatatgcctcaaaatgttgatccaatt |
27804631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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