View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_139 (Length: 250)
Name: NF6819A_low_139
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43831071 - 43830834
Alignment:
| Q |
1 |
attgaaagtctcatccacacctagcttccacgaaagcagattttgtataccaacatatgaagcaaaggaaattacatgtcctaataaatctttcttcatt |
100 |
Q |
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| T |
43831071 |
attgaaaggctcatccacacctagcttccacgaaagcagattttgtatgccaacatatgaagcaaaggaaattaaatgtcctaataaatctttcttcatt |
43830972 |
T |
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| Q |
101 |
gtctcttgtagtactaatcctcagaaatcaaataacagtgttaaacttctcgtctaacataatcattttgtatacaatgatagactgactaattttaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830971 |
gtctcttgtagtactaatcctcagaaatcaaataacagtgttaaacttctcgtctaacataatcattttgtatacaatgatagactgactaattttaaga |
43830872 |
T |
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| Q |
201 |
tcactcatctcatgcaaacaaaatgaattttcaatatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43830871 |
tcactcatctcatgcaaacaaaatgaattttcaatatt |
43830834 |
T |
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