View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_14 (Length: 442)
Name: NF6819A_low_14
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_14 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 41317208 - 41316771
Alignment:
| Q |
5 |
cagaatcagagaaaaacaaatatctaacacgagtccaacactactcataaaaaatcaactcagaatcttcttcacaacccaacgaagccaaaacatctac |
104 |
Q |
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| T |
41317208 |
cagaatcagcaaaaaacaaatgtctaacacgagtccaacactactcataaaaaatcaactcagaatcttcttcacaacccaacgaagccaaaacatctac |
41317109 |
T |
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| Q |
105 |
acatttgttggcttcttgataagagtagcacgcattcgcttcacgatccaattctaaccataagagtggcacacattgcaagctagttccctgacagcat |
204 |
Q |
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| T |
41317108 |
acatttgttggcttcttgataagagtagcacgcattcgcttcacgatccaattctaaccataagagtggcacacattgcaagctagttccctgacagcat |
41317009 |
T |
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| Q |
205 |
tttctgcatnnnnnnntgctgctataagcagccgcactccaccaacggtacattattttttatgcatgatgccagacagagaggattattcaattttgac |
304 |
Q |
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| T |
41317008 |
tttctgcataaaaaaatgctgctataagcagccgcactccaccaacggtacattattttttatgcatgatgccagacagagaggattattcaattttgac |
41316909 |
T |
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| Q |
305 |
aatgatgttacgtttatagtgatttgttgcaatgatggtgcatttatagagagcattattcaaatttaacggaggagtctggtccacaaatgaacctcta |
404 |
Q |
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| T |
41316908 |
aatgatgttacgtttataatgatttgttgcaatgatggtgcatttatagagagcattattcaaatttaacggaggagtctggtccacaaatgaacctcta |
41316809 |
T |
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| Q |
405 |
caaggggaagttaatgcaaatcacggttatagtgatta |
442 |
Q |
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| T |
41316808 |
caaggggaagttaatgcaaatcacggttatagtgatta |
41316771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 35 - 280
Target Start/End: Original strand, 120431 - 120676
Alignment:
| Q |
35 |
gagtccaacactactcataaaaaatcaactcagaatcttcttcacaacccaacgaagccaaaacatctacacatttgttggcttcttgataagagtagca |
134 |
Q |
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| T |
120431 |
gagtccgacactgctcagagaaaatctactcagaatcttcttcacaacccaaagaagccaaagcatccacacatttgttggcttcacaataagagtggca |
120530 |
T |
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| Q |
135 |
cgcattcgcttcacgatccaattctaaccataagagtggcacacattgcaagctagttccctgacagcattttctgcatnnnnnnntgctgctataagca |
234 |
Q |
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| T |
120531 |
cacattcacttcatgatccaattctaaccataagagtggcacacattgccacctagttcgcttacagcattttctgcat-aaaagatgctgctataagca |
120629 |
T |
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| Q |
235 |
gccgcact-ccaccaacggtacattattttttatgcatgatgccaga |
280 |
Q |
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| T |
120630 |
gccgcactaccaccaccagtacattatttcttatgcatgatgccaga |
120676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 120700 - 120732
Alignment:
| Q |
410 |
ggaagttaatgcaaatcacggttatagtgatta |
442 |
Q |
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| T |
120700 |
ggaagttaatgcaaatcacagttatagtgatta |
120732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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