View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_152 (Length: 249)

Name: NF6819A_low_152
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_152
NF6819A_low_152
[»] chr3 (5 HSPs)
chr3 (14-127)||(21966567-21966680)
chr3 (14-127)||(21989003-21989116)
chr3 (14-130)||(21967028-21967144)
chr3 (14-130)||(21989464-21989580)
chr3 (38-130)||(45421100-45421192)
[»] chr6 (4 HSPs)
chr6 (14-130)||(20481638-20481754)
chr6 (14-126)||(20487249-20487361)
chr6 (40-126)||(22970091-22970177)
chr6 (40-126)||(23818217-23818303)
[»] chr8 (3 HSPs)
chr8 (21-129)||(24860221-24860329)
chr8 (21-126)||(24858944-24859048)
chr8 (40-128)||(42127358-42127446)
[»] chr4 (3 HSPs)
chr4 (127-168)||(2771124-2771165)
chr4 (40-132)||(11384186-11384278)
chr4 (40-127)||(44491718-44491805)
[»] scaffold0625 (1 HSPs)
scaffold0625 (64-130)||(8000-8066)
[»] chr7 (1 HSPs)
chr7 (64-130)||(18993631-18993697)
[»] chr1 (1 HSPs)
chr1 (40-127)||(48678058-48678145)
[»] chr2 (2 HSPs)
chr2 (40-126)||(28240793-28240879)
chr2 (93-130)||(3833504-3833541)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 21966680 - 21966567
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  21966680 ggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaat 21966581  T
Q  114 atataattaagcct 127  Q
    ||||||||||||||    
T  21966580 atataattaagcct 21966567  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 21989116 - 21989003
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  21989116 ggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaat 21989017  T
Q  114 atataattaagcct 127  Q
    ||||||||||||||    
T  21989016 atataattaagcct 21989003  T

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Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 21967028 - 21967144
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||    
T  21967028 ggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagat 21967127  T
Q  114 atataattaagcctaaa 130  Q
    |||||||||||||||||    
T  21967128 atataattaagcctaaa 21967144  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 21989464 - 21989580
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||    
T  21989464 ggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagat 21989563  T
Q  114 atataattaagcctaaa 130  Q
    |||||||||||||||||    
T  21989564 atataattaagcctaaa 21989580  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 45421192 - 45421100
Alignment:
Q  38 aattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 130  Q
    ||||||||||| |||| ||||||   |||||||| |||||||||  |||  || | ||||| ||||||||||| |||| ||||| ||||||||    
T  45421192 aattaaaggactaaaacgaaacttttattaattaggggaccaaagtgaaacttagaaattaattaagggaccaaatatgtaatttagcctaaa 45421100  T

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Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 20481754 - 20481638
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  20481754 ggacataaacgatggacgaatcttaattaaaggaccaaaatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaagggaccagat 20481655  T
Q  114 atataattaagcctaaa 130  Q
    |||||||||||||||||    
T  20481654 atataattaagcctaaa 20481638  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 20487249 - 20487361
Alignment:
Q  14 ggacatcaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 113  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20487249 ggacataaacgatggacggatcttaattaaaggaccaaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagat 20487348  T
Q  114 atataattaagcc 126  Q
    |||||||||||||    
T  20487349 atataattaagcc 20487361  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 22970177 - 22970091
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 126  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  22970177 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 22970091  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 23818217 - 23818303
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 126  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  23818217 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 23818303  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 24860221 - 24860329
Alignment:
Q  21 aacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataat 120  Q
    ||||||||||| | ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860221 aacgatggacggagcttaattaaaggaccaaaatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataat 24860320  T
Q  121 taagcctaa 129  Q
    |||||||||    
T  24860321 taagcctaa 24860329  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 24859048 - 24858944
Alignment:
Q  21 aacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataat 120  Q
    ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || | |||||||||||    
T  24859048 aacgatggacggagcttaattaaaggaccaaaatgaacctaaaaataattaagggaccaaaacgaattttgataattatttaa-ggcctagatatataat 24858950  T
Q  121 taagcc 126  Q
    ||||||    
T  24858949 taagcc 24858944  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 42127446 - 42127358
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagccta 128  Q
    |||||||||| ||||| ||| ||||||| | | |||||||||  ||| | |  ||||||||||||||||||  ||| ||||||||||||    
T  42127446 ttaaaggaccgaaatggaacgaaaattattaaggggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagccta 42127358  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 2771124 - 2771165
Alignment:
Q  127 taaattgtatgaagctctagtcattagattacttgaccaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2771124 taaattgtatgaagctctagtcattagattacttgaccaaaa 2771165  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 11384278 - 11384186
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaatt 132  Q
    |||||||||| ||||| ||| ||||||| | | |||||||||  ||| | |  ||||||||||||||||||  ||||||||||||||||||||    
T  11384278 ttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcctaaatt 11384186  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 44491805 - 44491718
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 127  Q
    |||||||||||||||||  | ||||||||| | |||||||||  ||| | |  ||||||||||||||||||  ||| |||||||||||    
T  44491805 ttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct 44491718  T

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Target: scaffold0625 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 8000 - 8066
Alignment:
Q  64 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 130  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  8000 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 8066  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 18993697 - 18993631
Alignment:
Q  64 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 130  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  18993697 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 18993631  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 48678058 - 48678145
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 127  Q
    ||||| |||||||||| | | ||||||||| ||||||||||| |||| | |  ||||||||||||| ||||  |||||||| ||||||    
T  48678058 ttaaatgaccaaaatggagcgaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcct 48678145  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 28240793 - 28240879
Alignment:
Q  40 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 126  Q
    ||||||||||||||||  || ||||||||| | |||||||||   || |||  ||||||||||||||||||  ||| ||||||||||    
T  28240793 ttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc 28240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 3833541 - 3833504
Alignment:
Q  93 taattatttaagggaccagatatataattaagcctaaa 130  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3833541 taattatttaagggaccaattatataattaagcctaaa 3833504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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