View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_153 (Length: 248)
Name: NF6819A_low_153
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_153 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 44494586 - 44494810
Alignment:
| Q |
17 |
atattcatttccacaattgaacatggtccttggagattggagacatgttagtttactnnnnnnncttttttcttcatggctttattcatcaaaattattt |
116 |
Q |
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| T |
44494586 |
atattcatttccacaattgaacatggtccttggagattggagacatgttagtttactaaaaaaacttttttcttcatggctttattcatcaaaattattt |
44494685 |
T |
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| Q |
117 |
atgtgtacgtttttgttttcttcctattatgtgaccttaaatagtgtgttatagatttgtgatacacataaaagctggggcttactttgaaaacgtggaa |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44494686 |
atgt-tacgtttttgttttcttcctattatgtgaccttaaatagtgtgttacagatttgtgatacacataaaagctggggcttactttgaaaacgtggaa |
44494784 |
T |
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| Q |
217 |
gtgataaagaagaaaaccaatttgat |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44494785 |
gtgataaagaagaaaaccaatttgat |
44494810 |
T |
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