View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_154 (Length: 248)
Name: NF6819A_low_154
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9134891 - 9135084
Alignment:
| Q |
1 |
aacctttaataacacaagtagacctaggaggcaacacaagtagagggttaggggcaacacaaaacttctttggatttggagtattaacctgcaaatcaac |
100 |
Q |
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| T |
9134891 |
aacctttaatatcacaagtagacctaggaggcaacacaagtagagggttaggggtaacacaaaacgtctttggatttggagtattaacctggaaatcaac |
9134990 |
T |
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| Q |
101 |
aacaccatcaatttcactccaaattaaaaattacaactctc-agtaatgcaatttatcaaaacaa--acacacacaaatttacgaacttaattt |
191 |
Q |
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| T |
9134991 |
aacaccatcaatttcactccaaattaaaaattacaactctcaagtaatgcaatttatcaaaacaaacacacacacaaatttacgaacttaattt |
9135084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 9309982 - 9310067
Alignment:
| Q |
56 |
aacacaaaacttctttggatttggagtattaacctgcaaatcaacaacaccatcaatttcactccaaattaaaaattacaactctc |
141 |
Q |
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| T |
9309982 |
aacacaatacttctttggatttgtagtcttaacctgaaacaaaaaaaaaacatcaatttcattccaaatcaaaaattacaactctc |
9310067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 9135102 - 9135130
Alignment:
| Q |
214 |
gattgaatagtaaaataatgagaaccttg |
242 |
Q |
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| T |
9135102 |
gattgaatagtaaaataatgagaaccttg |
9135130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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