View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_162 (Length: 244)
Name: NF6819A_low_162
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_162 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 20427047 - 20427209
Alignment:
| Q |
54 |
caagtagcttcaaattcgggaaggtctttccattgaatgaggacctcagcaacaccatc----agtagtgttgcgtacagctttgacatcagcagggaca |
149 |
Q |
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| T |
20427047 |
caagtagcttcaaattcgggaaggtctttccattgaatgaggacctcagcaacaccatccatcagtagtgttgcgtacagc------------agggaca |
20427134 |
T |
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| Q |
150 |
acttgtaattccatgtcttcagagagcattggcggaagtggttgtggatttgttgagggagaaatagctttcttc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20427135 |
acttgtaattccatgtcttcagagagcattggcggaagtggttgtggatttgttgagggagaaatagctttcttc |
20427209 |
T |
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