View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_169 (Length: 242)

Name: NF6819A_low_169
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_169
NF6819A_low_169
[»] chr4 (5 HSPs)
chr4 (13-238)||(24666621-24666847)
chr4 (9-238)||(34941551-34941782)
chr4 (8-238)||(18363426-18363653)
chr4 (8-238)||(36599275-36599502)
chr4 (117-192)||(8752390-8752465)
[»] chr3 (2 HSPs)
chr3 (8-212)||(53242714-53242920)
chr3 (9-197)||(43479333-43479510)
[»] chr1 (2 HSPs)
chr1 (120-238)||(26240615-26240735)
chr1 (9-100)||(26240779-26240870)
[»] chr2 (2 HSPs)
chr2 (13-179)||(19697410-19697568)
chr2 (13-70)||(13265594-13265651)
[»] chr8 (1 HSPs)
chr8 (25-129)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 24666847 - 24666621
Alignment:
Q  13 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 112  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  24666847 aaaataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttctt 24666748  T
Q  113 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatat-ggaaagtgaca 211  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24666747 catctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 24666648  T
Q  212 ggaaccaatttcttggtgttgataact 238  Q
    |||||||||||||||||||||||||||    
T  24666647 ggaaccaatttcttggtgttgataact 24666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 34941551 - 34941782
Alignment:
Q  9 gaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt 108  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||| ||||||     
T  34941551 gaagaaaataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatc 34941650  T
Q  109 tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatat-ggaaagt 207  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  34941651 tcttcatcctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaat 34941750  T
Q  208 gacaggaa-ccaatttcttggtgttgataact 238  Q
    |||||||| |||||||||||||||||||||||    
T  34941751 gacaggaacccaatttcttggtgttgataact 34941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 18363653 - 18363426
Alignment:
Q  8 cgaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat 107  Q
    ||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||    
T  18363653 cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat 18363554  T
Q  108 ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatat-ggaaag 206  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18363553 ttcttcatcc--ttcaactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 18363458  T
Q  207 tgacaggaaccaatttcttggtgttgataact 238  Q
    ||||| ||||||||||||||||||||||||||    
T  18363457 tgacatgaaccaatttcttggtgttgataact 18363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 36599275 - 36599502
Alignment:
Q  8 cgaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat 107  Q
    ||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||    
T  36599275 cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat 36599374  T
Q  108 ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatat-ggaaag 206  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36599375 ttcttcatcc--ttcaactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag 36599470  T
Q  207 tgacaggaaccaatttcttggtgttgataact 238  Q
    ||||| ||||||||||||||||||||||||||    
T  36599471 tgacatgaaccaatttcttggtgttgataact 36599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
Q  117 cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 192  Q
    ||||||||||||||||||||  || |||| | | | ||||||| ||||||||||||||| ||| ||||||||||||    
T  8752390 cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa 8752465  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 53242714 - 53242920
Alignment:
Q  8 cgaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattat 105  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || |  ||| |||| |||||||||    
T  53242714 cgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattat 53242813  T
Q  106 atttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatggaaa 205  Q
    |||| |||||||| ||||||||   | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||||||| || | ||| |||    
T  53242814 atttgttcatcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaagcaaagatgaaaa 53242913  T
Q  206 gtgacag 212  Q
    |||||||    
T  53242914 gtgacag 53242920  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 43479510 - 43479333
Alignment:
Q  9 gaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt 108  Q
    |||||||||| | ||||||||| ||||||||  ||||||||||| | |    || ||||||| |||||||||| ||||  ||| |||| |||||||||||    
T  43479510 gaagaaaatatcatttgattgattcaatggtcaagatttattaatatttttttt-agaacatctagacattttcacatacaatattgttcctattatatt 43479412  T
Q  109 tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttg-aaaatgaaaaaccaga 197  Q
    |||||||| | |||||||| |           ||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  43479411 tcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaaaacatctacatccattcgaaaaatgaaaaaacaga 43479333  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
Q  120 ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatat-ggaaagtgacaggaa-cc 217  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  26240735 ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc 26240636  T
Q  218 aatttcttggtgttgataact 238  Q
    |||||||||||||||||||||    
T  26240635 aatttcttggtgttgataact 26240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26240870 - 26240779
Alignment:
Q  9 gaagaaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  26240870 gaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct 26240779  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 19697410 - 19697568
Alignment:
Q  13 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 112  Q
    ||||||| ||||||||||||||||| || |||||| || |||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  19697410 aaaatactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttctt 19697508  T
Q  113 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt 179  Q
    |||| ||||||||||| || |       |||| |||||||||||||| |||||||||||||||||||    
T  19697509 catcattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt 19697568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 13265594 - 13265651
Alignment:
Q  13 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat 70  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  13265594 aaaataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat 13265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
Q  25 gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa 124  Q
    |||||| ||||||||  ||||||||| ||||  ||||||||||||| || ||||||| ||||  |||||||||||||||||||||| ||||| | |||||    
T  32566563 gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa 32566467  T
Q  125 ctcct 129  Q
    |||||    
T  32566466 ctcct 32566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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