View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_17 (Length: 433)
Name: NF6819A_low_17
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 17432489 - 17432070
Alignment:
| Q |
8 |
gccaaagttacagtcaagcgaagaacagaatgattagttgaatcatcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432489 |
gccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
17432390 |
T |
|
| Q |
108 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432389 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaag |
17432290 |
T |
|
| Q |
208 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432289 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
17432190 |
T |
|
| Q |
308 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432189 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
17432090 |
T |
|
| Q |
408 |
cgacatcttgtaggaagaac |
427 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17432089 |
cgacatcttgtaggaagaac |
17432070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 51 - 427
Target Start/End: Complemental strand, 17436319 - 17435943
Alignment:
| Q |
51 |
catcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctgttccggaaacaacagaaagctctcttgaattttcgcgttgtcg |
150 |
Q |
| |
|
|||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
17436319 |
catcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccagaaacaacagagagctctcttgaattctcacgttgacg |
17436220 |
T |
|
| Q |
151 |
actagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagagatgttact |
250 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||| |
|
|
| T |
17436219 |
actattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaaactatgttcacatttgcaccatctagagatgtcact |
17436120 |
T |
|
| Q |
251 |
gtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgagttgtagg |
350 |
Q |
| |
|
||||| | |||||| |||||||| |||||||||||| |||| ||||| ||||||| | |||||||| || |||||||||||||| ||||||| ||| | |
|
|
| T |
17436119 |
gtaattacaccttgtgcccttccaatttgagttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagtggtaag |
17436020 |
T |
|
| Q |
351 |
accaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttccgacatcttgtaggaagaac |
427 |
Q |
| |
|
|||||||| |||| |||||||||||||| || |||||||||| | |||| |||| |||||||||||| ||||| |
|
|
| T |
17436019 |
accaaacccttccgttgatgccgataaccggcataacggttgcgttgaatcctcttcccacatcttgtaggtagaac |
17435943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University