View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_171 (Length: 241)
Name: NF6819A_low_171
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_171 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 31798689 - 31798862
Alignment:
| Q |
35 |
agtggctttgtcataagattttcatggaccatccattatttcgtgattgaacttgaatcttcaaattgcctacttgaattcctatt-nnnnnnnnnnnct |
133 |
Q |
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| T |
31798689 |
agtggctttgtcataagattttcatggaccatccattatttcgtgattgaacttgaatctacaaattgcctacttgaattcctattaaaaaaaaaaaact |
31798788 |
T |
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| Q |
134 |
acttgaattatat--aaacaaaatcttgcaagaattgttctactgagcaatcgaactagcaattaaaatcaatt |
205 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31798789 |
acttgaattatataaaaaaaaaatcttgcaagaattgttctactgagcaatcgaactagtaattaaaatcaatt |
31798862 |
T |
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