View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_176 (Length: 238)

Name: NF6819A_low_176
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_176
NF6819A_low_176
[»] chr6 (23 HSPs)
chr6 (20-218)||(4564550-4564748)
chr6 (34-147)||(4593084-4593199)
chr6 (24-122)||(4617865-4617963)
chr6 (34-122)||(4602642-4602730)
chr6 (45-122)||(4506718-4506795)
chr6 (40-122)||(3172597-3172679)
chr6 (34-122)||(4481543-4481631)
chr6 (34-122)||(4517171-4517259)
chr6 (45-122)||(4514315-4514392)
chr6 (50-122)||(4489555-4489627)
chr6 (49-122)||(4461988-4462061)
chr6 (33-122)||(4470652-4470741)
chr6 (33-124)||(4557974-4558065)
chr6 (33-120)||(4586485-4586572)
chr6 (42-124)||(4571830-4571912)
chr6 (33-118)||(4561353-4561438)
chr6 (33-118)||(4575157-4575242)
chr6 (85-121)||(4266358-4266394)
chr6 (33-124)||(4612910-4613001)
chr6 (45-122)||(4484033-4484111)
chr6 (58-124)||(4580915-4580981)
chr6 (44-116)||(4259354-4259426)
chr6 (42-98)||(4599028-4599084)
[»] chr3 (1 HSPs)
chr3 (31-117)||(1281964-1282050)
[»] scaffold0199 (1 HSPs)
scaffold0199 (33-122)||(316-405)
[»] chr8 (3 HSPs)
chr8 (33-122)||(1675079-1675168)
chr8 (54-122)||(20863037-20863105)
chr8 (58-120)||(16685482-16685544)
[»] chr5 (1 HSPs)
chr5 (85-120)||(24103903-24103938)
[»] scaffold0288 (1 HSPs)
scaffold0288 (34-116)||(2918-3000)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 4564550 - 4564748
Alignment:
Q  20 tactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcata 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4564550 tactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctgatctgcata 4564649  T
Q  120 tcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgttttcgacaaaaacatacatatataataaggtattat 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4564650 tcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgttttcgacaaaaacatacatatataataaggtattat 4564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 4593084 - 4593199
Alignment:
Q  34 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaaagtatc--a 131  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |    
T  4593084 tccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgcatatcaaaagtagcaaa 4593183  T
Q  132 gttaatatcttgaagg 147  Q
    ||||||| ||||||||    
T  4593184 gttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 4617865 - 4617963
Alignment:
Q  24 gtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||    
T  4617865 gtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaaacatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 4602642 - 4602730
Alignment:
Q  34 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| || ||||||||||||||    
T  4602642 tccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  45 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  40 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  34 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 4517171 - 4517259
Alignment:
Q  34 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||||| || |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4517171 tcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  45 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  50 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  49 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 124  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 120  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  42 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 124  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 118  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 118  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  85 aaatatccatttgttagatagctctcatctgcatatc 121  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 124  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  45 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 122  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  58 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 124  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  44 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 116  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  42 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 98  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 1281964 - 1282050
Alignment:
Q  31 atatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgca 117  Q
    |||||||| || || || |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  1281964 atatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatttgttagataactctcatctgca 1282050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 316 - 405
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||||||  |||||||||||||||||    
T  316 atccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 1675079 - 1675168
Alignment:
Q  33 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||||||  |||||||||||||||||    
T  1675079 atccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatca 1675168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  54 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 122  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  58 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 120  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  85 aaatatccatttgttagatagctctcatctgcatat 120  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 3000 - 2918
Alignment:
Q  34 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 116  Q
    ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||| || ||||||||    
T  3000 tcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgc 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University