View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_179 (Length: 236)
Name: NF6819A_low_179
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_179 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35449823 - 35450052
Alignment:
| Q |
1 |
gaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagcattg |
100 |
Q |
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| T |
35449823 |
gaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagcattg |
35449922 |
T |
|
| Q |
101 |
aagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaattattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449923 |
aagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaattattga |
35450022 |
T |
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| Q |
201 |
tcaatcaatgattgaagtactaacaccaaa |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35450023 |
tcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21010698 - 21010633
Alignment:
| Q |
1 |
gaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
66 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010698 |
gaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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