View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_187 (Length: 232)
Name: NF6819A_low_187
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_187 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 38567280 - 38567071
Alignment:
| Q |
16 |
gcggcttacaaaatgtttgagacaattaaaaggcggccagagatagatgcttatgatccaaatggaaaaatattggaggatattcaaggtgaaatagagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38567280 |
gcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagt |
38567181 |
T |
|
| Q |
116 |
tgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567180 |
tgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttgg |
38567081 |
T |
|
| Q |
216 |
acaaagtgga |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
38567080 |
acaaagtgga |
38567071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 38526162 - 38525946
Alignment:
| Q |
9 |
tcaggcagcggcttacaaaatgtttgagacaattaaaaggcggccagagatagatgcttatgatccaaatggaaaaatattggaggatattcaaggtgaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38526162 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgag |
38526063 |
T |
|
| Q |
109 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| |
|
|
| T |
38526062 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcat |
38525963 |
T |
|
| Q |
209 |
tggttggacaaagtgga |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38525962 |
tggttggacaaagtgga |
38525946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University