View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_188 (Length: 232)
Name: NF6819A_low_188
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_188 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 30841448 - 30841247
Alignment:
| Q |
22 |
ttgacagggggtatgatgaattgatgagcgcacacctggagagaagattgttgtgtaacaagcgtgagttggaagttgcaagtatgagttagacttagaa |
121 |
Q |
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| T |
30841448 |
ttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaacaaccgtgagttggaagttgcaagtatgagttagacttagaa |
30841349 |
T |
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| Q |
122 |
gtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaacctannnnnnnaaggttttgggtaaagatgtgatgtccatct |
220 |
Q |
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| T |
30841348 |
gtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacctatttttttaaggttttgggtaaagatgcggtgtccaact |
30841249 |
T |
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| Q |
221 |
ca |
222 |
Q |
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| T |
30841248 |
ca |
30841247 |
T |
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