View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_19 (Length: 424)

Name: NF6819A_low_19
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_19
NF6819A_low_19
[»] scaffold0896 (1 HSPs)
scaffold0896 (7-275)||(877-1148)
[»] chr6 (19 HSPs)
chr6 (7-275)||(8657062-8657333)
chr6 (120-273)||(33289070-33289223)
chr6 (218-273)||(24570754-24570809)
chr6 (208-264)||(3593057-3593113)
chr6 (208-275)||(13533931-13533998)
chr6 (214-264)||(8539723-8539773)
chr6 (163-264)||(162678-162779)
chr6 (208-273)||(1405563-1405628)
chr6 (208-264)||(2266940-2266996)
chr6 (208-264)||(10584737-10584793)
chr6 (208-264)||(12597274-12597330)
chr6 (208-264)||(19997829-19997885)
chr6 (208-264)||(33646106-33646162)
chr6 (213-264)||(15044891-15044942)
chr6 (208-264)||(28099606-28099662)
chr6 (163-262)||(6300720-6300819)
chr6 (163-262)||(6307530-6307629)
chr6 (214-264)||(17202602-17202652)
chr6 (208-264)||(2005592-2005648)
[»] chr4 (30 HSPs)
chr4 (7-280)||(19745018-19745294)
chr4 (7-280)||(19794512-19794788)
chr4 (7-281)||(23976698-23976975)
chr4 (208-273)||(44376079-44376144)
chr4 (11-88)||(45117179-45117256)
chr4 (208-264)||(16904961-16905017)
chr4 (208-264)||(37590813-37590869)
chr4 (208-264)||(46256198-46256254)
chr4 (163-264)||(18209630-18209731)
chr4 (208-264)||(12090468-12090524)
chr4 (208-264)||(30824931-30824987)
chr4 (208-264)||(33139480-33139536)
chr4 (208-264)||(37651830-37651886)
chr4 (208-264)||(47142809-47142865)
chr4 (208-264)||(52434788-52434844)
chr4 (232-273)||(11238181-11238222)
chr4 (208-273)||(39058357-39058422)
chr4 (234-274)||(9199865-9199905)
chr4 (234-274)||(9201404-9201444)
chr4 (208-264)||(16917897-16917953)
chr4 (229-264)||(31965978-31966013)
chr4 (207-253)||(35903632-35903678)
chr4 (208-262)||(53143273-53143327)
chr4 (236-273)||(17558825-17558862)
chr4 (236-273)||(32225583-32225620)
chr4 (229-278)||(48118529-48118578)
chr4 (206-262)||(22289966-22290022)
chr4 (229-273)||(35760766-35760810)
chr4 (206-262)||(37340614-37340669)
chr4 (208-264)||(41387290-41387346)
[»] chr8 (26 HSPs)
chr8 (7-273)||(405354-405623)
chr8 (7-275)||(17695393-17695664)
chr8 (7-169)||(44831791-44831956)
chr8 (161-273)||(44831134-44831246)
chr8 (108-236)||(1848914-1849044)
chr8 (208-264)||(39997855-39997911)
chr8 (208-283)||(6299010-6299085)
chr8 (215-264)||(23353631-23353680)
chr8 (208-273)||(28583019-28583084)
chr8 (208-264)||(995824-995880)
chr8 (208-264)||(10478101-10478157)
chr8 (208-264)||(11142631-11142687)
chr8 (208-264)||(11725354-11725410)
chr8 (208-264)||(15961296-15961352)
chr8 (208-264)||(18175545-18175601)
chr8 (208-264)||(18997864-18997920)
chr8 (208-264)||(30473893-30473949)
chr8 (208-264)||(32110870-32110926)
chr8 (213-264)||(18842073-18842124)
chr8 (213-264)||(44837078-44837129)
chr8 (208-264)||(35122331-35122387)
chr8 (208-264)||(44832195-44832251)
chr8 (213-264)||(18569034-18569085)
chr8 (236-273)||(16367879-16367916)
chr8 (208-261)||(24409040-24409093)
chr8 (236-273)||(42308123-42308160)
[»] chr1 (21 HSPs)
chr1 (7-273)||(28947454-28947723)
chr1 (8-273)||(29387887-29388155)
chr1 (208-264)||(1231960-1232016)
chr1 (208-264)||(35614231-35614287)
chr1 (208-264)||(38444795-38444851)
chr1 (202-264)||(52957034-52957096)
chr1 (302-363)||(4241031-4241091)
chr1 (208-264)||(4266545-4266601)
chr1 (208-264)||(18706518-18706574)
chr1 (208-264)||(29942182-29942238)
chr1 (208-264)||(31018209-31018265)
chr1 (208-264)||(34888695-34888751)
chr1 (208-264)||(38913756-38913812)
chr1 (208-264)||(50326165-50326221)
chr1 (214-264)||(18855242-18855292)
chr1 (214-264)||(23482716-23482766)
chr1 (213-258)||(14009850-14009895)
chr1 (228-264)||(2951375-2951411)
chr1 (208-264)||(9216195-9216251)
chr1 (208-264)||(52687123-52687179)
chr1 (236-273)||(51387129-51387166)
[»] chr5 (20 HSPs)
chr5 (7-273)||(30096276-30096545)
chr5 (7-273)||(30088702-30088957)
chr5 (7-152)||(30089193-30089341)
chr5 (208-275)||(25099234-25099301)
chr5 (208-275)||(25158324-25158391)
chr5 (163-264)||(8179762-8179864)
chr5 (208-264)||(20655058-20655114)
chr5 (208-264)||(33375928-33375984)
chr5 (208-264)||(2398951-2399007)
chr5 (208-264)||(10729451-10729507)
chr5 (208-264)||(16526315-16526371)
chr5 (208-264)||(20874852-20874908)
chr5 (208-264)||(34107347-34107403)
chr5 (208-264)||(34110816-34110872)
chr5 (208-264)||(38246874-38246930)
chr5 (208-264)||(40177205-40177261)
chr5 (236-273)||(4082591-4082628)
chr5 (236-273)||(16349715-16349752)
chr5 (208-264)||(1396153-1396209)
chr5 (236-273)||(40951487-40951524)
[»] chr3 (27 HSPs)
chr3 (7-271)||(37099504-37099771)
chr3 (292-406)||(19923990-19924105)
chr3 (7-152)||(37099121-37099268)
chr3 (292-406)||(19939977-19940091)
chr3 (208-264)||(4584443-4584499)
chr3 (208-264)||(6460177-6460233)
chr3 (208-264)||(26948962-26949018)
chr3 (208-264)||(36076463-36076519)
chr3 (208-264)||(1941729-1941785)
chr3 (208-264)||(3898586-3898642)
chr3 (208-264)||(12264364-12264420)
chr3 (208-264)||(34121519-34121575)
chr3 (208-264)||(38653936-38653992)
chr3 (208-264)||(43363620-43363676)
chr3 (208-264)||(49672726-49672782)
chr3 (208-264)||(55041592-55041648)
chr3 (232-273)||(5561553-5561594)
chr3 (208-264)||(20671413-20671469)
chr3 (208-264)||(21098468-21098524)
chr3 (208-264)||(31488575-31488631)
chr3 (208-264)||(49506358-49506414)
chr3 (229-264)||(40014662-40014697)
chr3 (236-274)||(44708226-44708264)
chr3 (233-271)||(53556913-53556951)
chr3 (206-262)||(5189798-5189854)
chr3 (213-253)||(39146609-39146649)
chr3 (233-273)||(44751632-44751672)
[»] scaffold0051 (1 HSPs)
scaffold0051 (7-244)||(10253-10493)
[»] chr7 (26 HSPs)
chr7 (108-273)||(31097776-31097941)
chr7 (109-273)||(32660934-32661098)
chr7 (108-170)||(31097607-31097669)
chr7 (150-273)||(21651484-21651607)
chr7 (150-251)||(21681015-21681116)
chr7 (208-264)||(13786334-13786390)
chr7 (208-264)||(16376554-16376610)
chr7 (208-264)||(17178246-17178302)
chr7 (155-258)||(21713585-21713688)
chr7 (208-264)||(21670145-21670201)
chr7 (208-264)||(21804581-21804637)
chr7 (208-264)||(27903426-27903482)
chr7 (208-264)||(33916956-33917012)
chr7 (208-264)||(38163348-38163404)
chr7 (216-264)||(40969063-40969111)
chr7 (208-264)||(42242163-42242219)
chr7 (208-259)||(24924243-24924294)
chr7 (213-264)||(43933553-43933604)
chr7 (208-264)||(3840650-3840706)
chr7 (208-264)||(31373620-31373676)
chr7 (232-275)||(7853687-7853730)
chr7 (229-264)||(21342008-21342043)
chr7 (232-273)||(44579787-44579828)
chr7 (208-264)||(27138537-27138593)
chr7 (65-93)||(31097561-31097589)
chr7 (65-93)||(31097730-31097758)
[»] chr2 (16 HSPs)
chr2 (108-275)||(31572345-31572512)
chr2 (208-264)||(8700425-8700481)
chr2 (208-264)||(19596372-19596428)
chr2 (208-264)||(41663401-41663457)
chr2 (208-264)||(6120716-6120772)
chr2 (208-264)||(18351715-18351771)
chr2 (208-264)||(27944805-27944861)
chr2 (208-264)||(31424173-31424229)
chr2 (208-264)||(41664674-41664730)
chr2 (208-264)||(44902245-44902301)
chr2 (208-264)||(20544989-20545045)
chr2 (208-264)||(42442128-42442184)
chr2 (236-274)||(22136278-22136316)
chr2 (208-245)||(692230-692267)
chr2 (234-262)||(2988911-2988939)
chr2 (65-93)||(31572299-31572327)
[»] scaffold0007 (1 HSPs)
scaffold0007 (150-240)||(79105-79195)
[»] scaffold0515 (1 HSPs)
scaffold0515 (213-273)||(6061-6121)
[»] scaffold0306 (1 HSPs)
scaffold0306 (213-273)||(6071-6131)
[»] scaffold0031 (1 HSPs)
scaffold0031 (208-264)||(46438-46494)
[»] scaffold0173 (1 HSPs)
scaffold0173 (208-264)||(19511-19567)
[»] scaffold0022 (1 HSPs)
scaffold0022 (208-264)||(149059-149115)
[»] scaffold0836 (1 HSPs)
scaffold0836 (208-264)||(5287-5343)


Alignment Details
Target: scaffold0896 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 877 - 1148
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa---atattttaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    | ||| |      
T  877 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttctattattaaattatagattgttg 976  T
Q  104 aattatgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  977 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggattgtattata 1076  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1077 aaattttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggtggacgatctagtaa 1148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 8657333 - 8657062
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa---atattttaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    | ||| |      
T  8657333 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttctattattaaattatagattgttg 8657234  T
Q  104 aattatgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8657233 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggattgtattata 8657134  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8657133 aaattttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggtggacgatctagtaa 8657062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 120 - 273
Target Start/End: Complemental strand, 33289223 - 33289070
Alignment:
Q  120 atattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtc 219  Q
    |||||||||||| ||||||||| || |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  33289223 atattttgaatcaattatacaaatttcttctatagttgtatttataattttgacattaaaattataagttgggactatattatcaaatgttgcttttgtc 33289124  T
Q  220 tactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33289123 taccacacttacaatctatatgacccgtgcggcagcacgggtggacgatctagt 33289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 24570809 - 24570754
Alignment:
Q  218 tctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  24570809 tctactacacttacaatgtatatgacccgtgtggcagcacgggtggacgatctagt 24570754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3593057 - 3593113
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  3593057 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 3593113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 13533931 - 13533998
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||  |||||||||    
T  13533931 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagtaa 13533998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 8539723 - 8539773
Alignment:
Q  214 tttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  8539723 tttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 8539773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 162779 - 162678
Alignment:
Q  163 aaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    ||||| |||||||||||||||||||||   | || | |||  |||||||||||   |||||||| ||  |||||||||||||| ||||||||||||||||    
T  162779 aaaataatgacattaaaattataagttataattgaactattgaattttgctttgacctactacattttgaatgtatatgacccgtgcggcagcacgggtg 162680  T
Q  263 ga 264  Q
    ||    
T  162679 ga 162678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 1405628 - 1405563
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||  |||||||    
T  1405628 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 1405563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 2266940 - 2266996
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  2266940 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 2266996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 10584793 - 10584737
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  |||||||||||||||||||  |||||||||||||||    
T  10584793 tttgtttttgtctactacatctacaatgtatatgacccatatggcagcacgggtgga 10584737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 12597330 - 12597274
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  12597330 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 12597274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 19997829 - 19997885
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  19997829 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 19997885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 33646106 - 33646162
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  33646106 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 33646162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 15044891 - 15044942
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||||||    
T  15044891 ttttgtctactacatctacaatgtatatgacctgtgcggcagcacgggtgga 15044942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 28099662 - 28099606
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||| || |  ||||||||||||||||| ||||||||||||||||||    
T  28099662 tttgtttttgtctattatatctacaatgtatatgacccgtgcggcagcacgggtgga 28099606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 6300819 - 6300720
Alignment:
Q  163 aaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    ||||| |||||||||||| ||||| |||  | ||   ||| ||| |||| ||||| |||||| |  ||||||||||||||||| ||||||||||||||||    
T  6300819 aaaataatgacattaaaactataaattgtaattgagctattaaactttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggtg 6300720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 6307629 - 6307530
Alignment:
Q  163 aaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    ||||| |||||||||||| ||||| |||  | ||   ||| ||| |||| ||||| |||||| |  ||||||||||||||||| ||||||||||||||||    
T  6307629 aaaataatgacattaaaactataaattgtaattgagctattaaactttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggtg 6307530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 17202602 - 17202652
Alignment:
Q  214 tttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||||  |||||||||||||||   ||||||||||||||||||    
T  17202602 tttgtctactacatctacaatgtatatgacttgtgcggcagcacgggtgga 17202652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 2005592 - 2005648
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||| ||  ||||||||||||||||| |||||| ||||| |||||    
T  2005592 tttgtttttgtctactgcatctacaatgtatatgacccgtgcggccgcacgagtgga 2005648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 19745018 - 19745294
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||  ||        
T  19745018 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttctgttattaaattatagattgctg 19745117  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19745118 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 19745217  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaaatatt 280  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  19745218 aaatgttgcctttgtctactacacttacaatgtatatgacccgtgcggccgcacgggtggacgatctagtaactatt 19745294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 19794788 - 19794512
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||  ||        
T  19794788 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttctgttattaaattatagattgctg 19794689  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19794688 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 19794589  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaaatatt 280  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  19794588 aaatgttgcctttgtctactacacttacaatgtatatgacccgtgcggccgcacgggtggacgatctagtaactatt 19794512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 23976975 - 23976698
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||  ||        
T  23976975 atataatatatgaatttttaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttctgttattaaattatagattgctg 23976876  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23976875 ctcaatgtcactaaaaatattttgaatcaattatacaatctccttctacagttgtatttaaaattatgacattaaaattataagttgggactgtattata 23976776  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaaatattt 281  Q
    |||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  23976775 aaatgttgcttttgtgtactacacttacaatatatatgacccgtgcggcagcacgggtggacgatctagtaaacattt 23976698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 44376144 - 44376079
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  44376144 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggacgatctagt 44376079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 45117256 - 45117179
Alignment:
Q  11 aatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgtta 88  Q
    ||||||||||| || ||||||||||||||||| ||| || |||| |||| | ||||||| ||||||||||||||||||    
T  45117256 aatatatgaatatttaatgtaattgactcacgggaacaagagatatgtgtattgcttttagcaaaatctcttctgtta 45117179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 16905017 - 16904961
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  16905017 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 16904961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 37590869 - 37590813
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  37590869 tttgattttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 37590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 46256198 - 46256254
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  46256198 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 46256254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 18209630 - 18209731
Alignment:
Q  163 aaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    ||||| |||||||||||||||||||||   | || | |||  |||||||||||   |||||||| ||  |||||||||||||| ||||||||||||||||    
T  18209630 aaaataatgacattaaaattataagttataattgaactattgaattttgctttgacctactacattttgaatgtatatgacccgtgcggcagcacgggtg 18209729  T
Q  263 ga 264  Q
    ||    
T  18209730 ga 18209731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 12090524 - 12090468
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  12090524 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 12090468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 30824987 - 30824931
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  30824987 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 30824931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 33139536 - 33139480
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  33139536 tttgtttttgtctactaaatctacaatgtatatgacccgtgcggcagcacgggtgga 33139480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 37651830 - 37651886
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  37651830 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 37651886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 47142865 - 47142809
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||  ||||||||||||||||||    
T  47142865 tttgtttttgtctactacatctacaatgtatatgaccagtgcggcagcacgggtgga 47142809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 52434788 - 52434844
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  52434788 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 52434844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 11238181 - 11238222
Alignment:
Q  232 aatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  11238181 aatgtatatgacccgtgcggcagcacgggtggccgatctagt 11238222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 39058422 - 39058357
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||| ||||||  |||||||    
T  39058422 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacaggtggaaaatctagt 39058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 9199905 - 9199865
Alignment:
Q  234 tgtatatgacccatgcggcagcacgggtggacgatctagta 274  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  9199905 tgtatatgacccgtgcggcagcacgggtagacgatctagta 9199865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 9201444 - 9201404
Alignment:
Q  234 tgtatatgacccatgcggcagcacgggtggacgatctagta 274  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  9201444 tgtatatgacccgtgcggcagcacgggtagacgatctagta 9201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 16917953 - 16917897
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||| ||||||    
T  16917953 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacaggtgga 16917897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 31966013 - 31965978
Alignment:
Q  229 tacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31966013 tacaatgtatatgacccgtgcggcagcacgggtgga 31965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 35903632 - 35903678
Alignment:
Q  207 ttttgcttttgtctactacacttacaatgtatatgacccatgcggca 253  Q
    |||||||||||||||||||| |||| |||||||||| || |||||||    
T  35903632 ttttgcttttgtctactacatttacgatgtatatgatccgtgcggca 35903678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 53143327 - 53143273
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    |||| ||||||||| || |  ||||||||||||||||| ||||||||||||||||    
T  53143327 tttgtttttgtctattatatctacaatgtatatgacccgtgcggcagcacgggtg 53143273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 17558862 - 17558825
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  17558862 tatatgacccgtgcggcagcacgggtagacgatctagt 17558825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 32225620 - 32225583
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  32225620 tatatgacccgtgcggcagcaccggtggacgatctagt 32225583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 48118578 - 48118529
Alignment:
Q  229 tacaatgtatatgacccatgcggcagcacgggtggacgatctagtaaata 278  Q
    ||||||||||||||| | ||||||||||||||||||   |||||||||||    
T  48118578 tacaatgtatatgactcgtgcggcagcacgggtggaaagtctagtaaata 48118529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 22290022 - 22289966
Alignment:
Q  206 attttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    |||||| ||||| || ||||| || ||||||||||||| | ||||||||||||||||    
T  22290022 attttgtttttgccttctacattttcaatgtatatgactcgtgcggcagcacgggtg 22289966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 35760766 - 35760810
Alignment:
Q  229 tacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||||| | ||||||||||||||||||  |||||||    
T  35760766 tacaatgtatatgactcgtgcggcagcacgggtggaaaatctagt 35760810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 37340669 - 37340614
Alignment:
Q  206 attttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    |||||||||||||||||||   ||||| |||||||||||| |||| |||||||||||    
T  37340669 attttgcttttgtctactatt-ttacattgtatatgacccgtgcgtcagcacgggtg 37340614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 41387290 - 41387346
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| | ||||||||||| ||||    
T  41387290 tttgtttttgtctactatatctacaatgtatatgacccgtacggcagcacggatgga 41387346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 405623 - 405354
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||  ||        
T  405623 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttatgttattaaattatagattgctg 405524  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  405523 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggattgtattata 405424  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  405423 aaattttgcttttgtctactatacttacaatgtatatgacccgtgcggcagcacgggtggacgatctagt 405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 17695393 - 17695664
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||  |||  ||        
T  17695393 atataatagatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcggtggttttggcaaaatctcttatgttattaaattatagattgctg 17695492  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17695493 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 17695592  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  17695593 aaattttgcttttatctactacacttacaatgtatattacccgtgcggcagcacgggtggacgatctagtaa 17695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 44831956 - 44831791
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaa-aatattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||  ||        
T  44831956 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttatgttattaaattatagattgctg 44831857  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaatta 169  Q
     |  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44831856 ctcaatgtcactaaaaatatttagaatcaattatacaatttccttctatagttgtatttaaaatta 44831791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 44831246 - 44831134
Alignment:
Q  161 ttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacggg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  44831246 ttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttatctactacacttacaatgtatatgacccgagcggcagcacggg 44831147  T
Q  261 tggacgatctagt 273  Q
    ||||| |||||||    
T  44831146 tggactatctagt 44831134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 1849044 - 1848914
Alignment:
Q  108 atgtcactaaaaatattttgaatcta--ttatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaa 205  Q
    |||||||||||||||||||||||| |  ||||||||| | ||| ||||||| | ||||||||||||| ||||||| |||||||||||| |||| ||||||    
T  1849044 atgtcactaaaaatattttgaatcaaaattatacaatctgcttttatagttctgtttaaaattatgatattaaaaatataagttgggattgtactataaa 1848945  T
Q  206 attttgcttttgtctactacacttacaatgt 236  Q
    |||||||| |||||||||||| ||| |||||    
T  1848944 attttgctgttgtctactacatttataatgt 1848914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 39997855 - 39997911
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  39997855 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 39997911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 6299085 - 6299010
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaaatatttta 283  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||   ||||||||| ||||||    
T  6299085 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtaaacatttta 6299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 23353680 - 23353631
Alignment:
Q  215 ttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  23353680 ttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 23353631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 28583019 - 28583084
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||  |||||||    
T  28583019 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 28583084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 995880 - 995824
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  995880 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 995824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 10478101 - 10478157
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  10478101 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 10478157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 11142631 - 11142687
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  |||||||||||||| || ||||||||||||||||||    
T  11142631 tttgtttttgtctactacatctacaatgtatatgatccgtgcggcagcacgggtgga 11142687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 11725354 - 11725410
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  11725354 tttgtttttgtctactacatctacaatgtatatgacccgtgcagcagcacgggtgga 11725410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 15961296 - 15961352
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  15961296 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 15961352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 18175545 - 18175601
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  18175545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 18175601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 18997864 - 18997920
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  18997864 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 18997920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 30473949 - 30473893
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  30473949 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 30473893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 32110926 - 32110870
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  32110926 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 32110870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 18842073 - 18842124
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||||    
T  18842073 ttttgtctactacatctacaatgtatatgacccgtgcggcagaacgggtgga 18842124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 44837078 - 44837129
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||  |||||||||||| |||| ||||||||||||||||||    
T  44837078 ttttgtctactacatctacaatgtatataacccgtgcggcagcacgggtgga 44837129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 35122387 - 35122331
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| |||| ||||| |||||||    
T  35122387 tttgtttttgtctactacatctacaatgtatatgacccgtgcgacagcaggggtgga 35122331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 44832251 - 44832195
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||| ||||||||||    
T  44832251 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcaacacgggtgga 44832195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 18569034 - 18569085
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||| |||  ||||||||||||||||| ||||| ||||||||||||    
T  18569034 ttttgtctacaacatctacaatgtatatgacccgtgcggtagcacgggtgga 18569085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 16367879 - 16367916
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  16367879 tatatgacccgtgcggcagcacgggtagacgatctagt 16367916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 24409040 - 24409093
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggt 261  Q
    |||| |||| |||||||||  ||||||||||||||||| ||||||| |||||||    
T  24409040 tttgtttttatctactacatctacaatgtatatgacccgtgcggcaacacgggt 24409093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 42308160 - 42308123
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  42308160 tatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 28947723 - 28947454
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||  ||        
T  28947723 atataatatatgaattttcaatgtaactgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctcttttgttattaaattatagattgctg 28947624  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28947623 ctcaatgtcactaaaaatattttgaatcaattatacaatttctttctatagttgtatttaaaattatgacattaaaattataagttgagactgtattata 28947524  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  28947523 aaattttgcttttgtctactacacttataatgtatatgacccgtgcggcagcacgggtggacgatctagt 28947454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 29388155 - 29387887
Alignment:
Q  8 tataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||  |||  ||         
T  29388155 tataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgtagtacttttggcaaaatctcttatgttattaaattatagattgctgc 29388056  T
Q  107 t--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataa 204  Q
    |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29388055 tcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggattgtattataa 29387956  T
Q  205 aattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  29387955 aattttgtttttgtctactacacttacaatgtatatgacccgtgcggcagtacgggtggacgatctagt 29387887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 1231960 - 1232016
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  1231960 tttgtttttgtctactatatttacaatgtatatgacccgtgcggcagcacgggtgga 1232016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 35614231 - 35614287
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  35614231 tttgtttttgtctactacatttacaatgtatatgacccgtgcggtagcacgggtgga 35614287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 38444795 - 38444851
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  38444795 tttgtttttgtctactacatctacaatgtatatgacccatgcggcatcacgggtgga 38444851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 52957034 - 52957096
Alignment:
Q  202 taaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||||| | ||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  52957034 taaaattttgctttggcctaatacatctacaatgtatatgacccgtgcggcagcacgggtgga 52957096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 4241031 - 4241091
Alignment:
Q  302 ggtttgcaacgtatgcgaagctgctgtgaatttatttcacttgccgatcattaatatttttt 363  Q
    |||||| |||||||||||||  || |||||||||||||||||||| ||||||||||||||||    
T  4241031 ggtttggaacgtatgcgaaga-gccgtgaatttatttcacttgccaatcattaatatttttt 4241091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 4266545 - 4266601
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  4266545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 4266601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 18706574 - 18706518
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  18706574 tttgtttttgtctactacatctacaatgtatatgactcgtgcggcagcacgggtgga 18706518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 29942182 - 29942238
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  29942182 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 29942238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 31018265 - 31018209
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  31018265 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 31018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 34888751 - 34888695
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  34888751 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 34888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 38913812 - 38913756
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  38913812 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 38913756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 50326165 - 50326221
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  50326165 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 50326221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 18855292 - 18855242
Alignment:
Q  214 tttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||| ||  ||||||||||||||||| ||||||||||||||||||    
T  18855292 tttgtctactgcatctacaatgtatatgacccgtgcggcagcacgggtgga 18855242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 23482766 - 23482716
Alignment:
Q  214 tttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  23482766 tttgtctactacatctacaatgtatatgactcgtgcggcagcacgggtgga 23482716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 14009850 - 14009895
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacg 258  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||    
T  14009850 ttttgtctactacatttacaatttatatgacccgtgcggcagcacg 14009895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 2951411 - 2951375
Alignment:
Q  228 ttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2951411 ttacaatgtatatgacccgtgcggcagcacgggtgga 2951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 9216195 - 9216251
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||| ||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  9216195 tttgtttttatctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 9216251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 52687179 - 52687123
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||| |||||||  ||||||||||||||||| |||| |||||||||||||    
T  52687179 tttgtttttgtatactacatctacaatgtatatgacccgtgcgacagcacgggtgga 52687123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 51387166 - 51387129
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  51387166 tatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 30096545 - 30096276
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||  |||  ||        
T  30096545 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgtttttggcaaaatctcttatgttattaaattatagattgctg 30096446  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30096445 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttcaaattatgacattaaaattataagttgggactgtattata 30096346  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||    
T  30096345 aaattttgcttttgtctacaatacttacaatgtatatgatccgtgcggcagcacgggtggacgatctagt 30096276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 30088957 - 30088702
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||  |||  ||        
T  30088957 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaacctcttcttttattaaattatagattgctg 30088858  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||    
T  30088857 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattat--------------aagttgggactgtattata 30088772  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||| |||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||    
T  30088771 aaattttgtttttgtctacaatacttacaatgtatatgacccgtgcggcagcacggatggacgatctagt 30088702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 30089341 - 30089193
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaa-aatattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |||  ||        
T  30089341 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaattcttttctgttattaaattatagattgctg 30089242  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctat 152  Q
    ||  |||||||||||||||||||||||| |||||||||||| |||||||    
T  30089241 ttcaatgtcactaaaaatattttgaatcaattatacaattttcttctat 30089193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 25099301 - 25099234
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  25099301 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggacgatctagtaa 25099234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 25158391 - 25158324
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  25158391 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggacgatctagtaa 25158324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 8179864 - 8179762
Alignment:
Q  163 aaaattatgacattaaaattataagttgggactgtatta-taaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggt 261  Q
    ||||| ||||||||||||||||||||||  | ||  ||| |||| ||||||||| ||||||||||  |||||| ||||||| || |||||||||||||||    
T  8179864 aaaatgatgacattaaaattataagttgtaattgagttattaaacttttgctttggtctactacatctacaatatatatgatccgtgcggcagcacgggt 8179765  T
Q  262 gga 264  Q
    |||    
T  8179764 gga 8179762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 20655114 - 20655058
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  20655114 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 20655058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 33375928 - 33375984
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  33375928 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 33375984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 2399007 - 2398951
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  2399007 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 2398951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 10729507 - 10729451
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  10729507 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 10729451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 16526371 - 16526315
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  16526371 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 16526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 20874852 - 20874908
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  20874852 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 20874908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 34107403 - 34107347
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  34107403 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 34107347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 34110816 - 34110872
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  34110816 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 34110872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 38246930 - 38246874
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  38246930 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 38246874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 40177205 - 40177261
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  40177205 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 40177261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 4082591 - 4082628
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4082591 tatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 16349752 - 16349715
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16349752 tatatgacccgtgcggcagcacgggtggacgatctagt 16349715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 1396153 - 1396209
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||| |||||  | ||||||||||||||| ||||||||||||||||||    
T  1396153 tttgtttttgtctgctacatctgcaatgtatatgacccgtgcggcagcacgggtgga 1396209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 40951487 - 40951524
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40951487 tatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 37099504 - 37099771
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa---atattttaa 103  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||| ||||||||||    | ||| |      
T  37099504 atataatatatgaattttcaatgtaattgacttaccagaaaaagagatgtgtgcaatgcttttggcaaaatctcttatgttattaaattatagattgttg 37099603  T
Q  104 aattatgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
        ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37099604 ctcaatgtcactaaaaacattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattacaagttgggactgtattata 37099703  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatcta 271  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37099704 aaattttacttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggtggacgatcta 37099771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 19923990 - 19924105
Alignment:
Q  292 caactattagggtttgcaacgtatgcgaagctgctgtgaatttatttcacttgccgatcattaata-ttttttaaataaatatctctaaaatgaattatt 390  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||    
T  19923990 caacttttagggtttgcaacgtatgcgaagctgctatgaatttatttgacttgccaatcattaatatttttttaaataaatatctctaaaatgaataatt 19924089  T
Q  391 tggtagaaatctcatg 406  Q
    |||| |||||||||||    
T  19924090 tggtcgaaatctcatg 19924105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 37099121 - 37099268
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaa-aatattttaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||  ||        
T  37099121 atataatatatgaattttcaatgtaattgactcacgagaaaaagagatgtgtgcagtgcttttggcaaaatctctt-tgttattaaattatagattgctg 37099219  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctat 152  Q
     |  |||||||||||||||||||||||| ||||||||||||||||||||    
T  37099220 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctat 37099268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 19939977 - 19940091
Alignment:
Q  292 caactattagggtttgcaacgtatgcgaagctgc-tgtgaatttatttcacttgccgatcattaatattttttaaataaatatctctaaaatgaattatt 390  Q
    ||||| |||||||| ||||||||||| |||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | || |||    
T  19939977 caacttttagggttggcaacgtatgcaaagctctgtgtgaatttatttcacttgccaatcattaatattttttaaataaatatctctgaaaag-atcatt 19940075  T
Q  391 tggtagaaatctcatg 406  Q
    |||| | |||||||||    
T  19940076 tggttggaatctcatg 19940091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 4584499 - 4584443
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  4584499 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 4584443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 6460233 - 6460177
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  6460233 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 6460177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 26948962 - 26949018
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  26948962 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 26949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 36076519 - 36076463
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  36076519 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 36076463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 1941785 - 1941729
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  1941785 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 1941729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 3898586 - 3898642
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  3898586 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 3898642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 12264364 - 12264420
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  12264364 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 12264420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 34121519 - 34121575
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  34121519 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 34121575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 38653992 - 38653936
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  38653992 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 38653936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 43363676 - 43363620
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  43363676 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 43363620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 49672726 - 49672782
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  49672726 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 49672782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 55041648 - 55041592
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||| ||||||||||||    
T  55041648 tttgtttttgtctactacatctacaatgtatatgacccgtgcggtagcacgggtgga 55041592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 5561594 - 5561553
Alignment:
Q  232 aatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||||||| ||||||||||||||| |||||||||||    
T  5561594 aatgtatatgacccgtgcggcagcacgggtagacgatctagt 5561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 20671413 - 20671469
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||| | || |||||||||||||||    
T  20671413 tttgtttttgtctactacatctacaatgtatatgactcgtgtggcagcacgggtgga 20671469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 21098468 - 21098524
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||| || |  ||||||||||||||||| ||||||||||||||||||    
T  21098468 tttgtttttgtctattatatctacaatgtatatgacccgtgcggcagcacgggtgga 21098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 31488575 - 31488631
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  |||||||||||| |||| ||||||||||||| ||||    
T  31488575 tttgtttttgtctactacatctacaatgtatataacccgtgcggcagcacggatgga 31488631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 49506414 - 49506358
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| |||||||| |||||||||    
T  49506414 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagtacgggtgga 49506358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 40014697 - 40014662
Alignment:
Q  229 tacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||||| ||||||||||||||||||    
T  40014697 tacaatgtatatgacccgtgcggcagcacgggtgga 40014662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 44708264 - 44708226
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagta 274  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  44708264 tatatgacccgtgcggcagcacgggtagacgatctagta 44708226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 53556951 - 53556913
Alignment:
Q  233 atgtatatgacccatgcggcagcacgggtggacgatcta 271  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  53556951 atgtatatgacccgtgcggcagcacgggtggatgatcta 53556913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 5189854 - 5189798
Alignment:
Q  206 attttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtg 262  Q
    |||||||||||||||||||   ||||| | |||||||||| ||||| ||||||||||    
T  5189854 attttgcttttgtctactatttttacattatatatgacccttgcggtagcacgggtg 5189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 39146609 - 39146649
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggca 253  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  39146609 ttttgtctactacatctacaatgtatatgacccgtgcggca 39146649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 44751672 - 44751632
Alignment:
Q  233 atgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||| |||||||||| ||||||| ||||||||    
T  44751672 atgtatatgacccgtgcggcagcatgggtggatgatctagt 44751632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 10493 - 10253
Alignment:
Q  7 atataatatatgaattttcaatgtaattgactcacgagaaaaatagatgtgtgcagtgcttttggcaaaatctcttctgttattaaaa-atattttaaaa 105  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||  ||        
T  10493 atataatatatgaattttcaatgtaattgactcaggagaaaaagagatgtgtgtagtgcttttggcaaaatctcttctgttattaaattatagattgctg 10394  T
Q  106 tt--atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattata 203  Q
     |  |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  10393 ctcaatgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtgtttaaaattatgacattaaaattataagttgggactatattata 10294  T
Q  204 aaattttgcttttgtctactacacttacaatgtatatgacc 244  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  10293 aaattttgcttttgtctactacacttacaatatatatgacc 10253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 108 - 273
Target Start/End: Original strand, 31097776 - 31097941
Alignment:
Q  108 atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaat 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31097776 atgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaat 31097875  T
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31097876 gttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggtggacgatctagt 31097941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 109 - 273
Target Start/End: Original strand, 32660934 - 32661098
Alignment:
Q  109 tgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaatt 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32660934 tgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttggcactgtattataaaatt 32661033  T
Q  209 ttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  32661034 ttgcttttgtctactacacttacaatgtatatgactcgtgcggcagcacgggtagacgatctagt 32661098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 31097607 - 31097669
Alignment:
Q  108 atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattat 170  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31097607 atgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattat 31097669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 273
Target Start/End: Original strand, 21651484 - 21651607
Alignment:
Q  150 tatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgc 249  Q
    |||| |||||||||  ||||| |||||||||||||||||||||   ||| |||  |||||||||| |||||| | || |||||||||||||||||||||     
T  21651484 tataattgtatttattattataacattaaaattataagttgggtaagtactatctaattttgcttctgtctattgcatttacaatgtatatgacccatgt 21651583  T
Q  250 ggcagcacgggtggacgatctagt 273  Q
     | | ||||||| ||| |||||||    
T  21651584 tgtatcacgggtagaccatctagt 21651607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 21681015 - 21681116
Alignment:
Q  150 tatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgc 249  Q
    |||| |||||||||   |||| |||||||||||||||||||||  |||  |||| ||||||  |||||||||||||| |||| ||||||||||||| |||    
T  21681015 tataattgtatttattcttataacattaaaattataagttgggtatgtgctatataattttatttttgtctactacatttacgatgtatatgacccgtgc 21681114  T
Q  250 gg 251  Q
    ||    
T  21681115 gg 21681116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 13786334 - 13786390
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  13786334 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 13786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 16376610 - 16376554
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  16376610 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 16376554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 17178302 - 17178246
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  17178302 tttgtttttgtctactatatctacaatgtatatgacccatgcggcagcacgggtgga 17178246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 21713585 - 21713688
Alignment:
Q  155 ttgtatttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatatgacccatgcggcag 254  Q
    |||||||||  ||||| |||||||||||||||  | ||  |||| |||| |||||||||||| |||||||||  |||  |||||||||||||||||| ||    
T  21713585 ttgtatttattattataacattaaaattataaaattggtatgtactatataattttgcttttatctactacatctacggtgtatatgacccatgcggtag 21713684  T
Q  255 cacg 258  Q
    ||||    
T  21713685 cacg 21713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 21670145 - 21670201
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||  ||||||||||||||||||    
T  21670145 tttgtttttgtctactacatctacaatgtatatgacctgtgcggcagcacgggtgga 21670201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 21804637 - 21804581
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  21804637 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 21804581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 27903482 - 27903426
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  |||||| |||||||||| ||||||||||||||||||    
T  27903482 tttgtttttgtctactacatctacaatatatatgacccgtgcggcagcacgggtgga 27903426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 33917012 - 33916956
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  33917012 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 33916956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 38163404 - 38163348
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  38163404 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 38163348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 40969063 - 40969111
Alignment:
Q  216 tgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  40969063 tgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 40969111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 42242219 - 42242163
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  42242219 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 42242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 24924243 - 24924294
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgg 259  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||    
T  24924243 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgg 24924294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 43933604 - 43933553
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||  ||||||||||||||||| ||||| ||||||||||||    
T  43933604 ttttgtctactacatctacaatgtatatgacccttgcggtagcacgggtgga 43933553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 3840706 - 3840650
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||| | ||||||||||||||||||    
T  3840706 tttgtttttgtctactatatctacaatgtatatgactcgtgcggcagcacgggtgga 3840650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 31373620 - 31373676
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||| || |  ||||||||||||||||| ||||||||||||||||||    
T  31373620 tttgtttttgtctattatatctacaatgtatatgacccgtgcggcagcacgggtgga 31373676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 7853687 - 7853730
Alignment:
Q  232 aatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  7853687 aatgtatatgacccgtgcggtagcacgggtagacgatctagtaa 7853730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 21342008 - 21342043
Alignment:
Q  229 tacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21342008 tacaatgtatatgacccgtgcggcagcacgggtgga 21342043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 44579787 - 44579828
Alignment:
Q  232 aatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||||||| |||||||||| |||| |||||||||||    
T  44579787 aatgtatatgacccgtgcggcagcatgggtagacgatctagt 44579828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 27138593 - 27138537
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  || |||||||||||||  ||||||||||||||||||    
T  27138593 tttgtttttgtctactatatctagaatgtatatgacctgtgcggcagcacgggtgga 27138537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 31097561 - 31097589
Alignment:
Q  65 cttttggcaaaatctcttctgttattaaa 93  Q
    |||||||||||||||||||||||||||||    
T  31097561 cttttggcaaaatctcttctgttattaaa 31097589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 31097730 - 31097758
Alignment:
Q  65 cttttggcaaaatctcttctgttattaaa 93  Q
    |||||||||||||||||||||||||||||    
T  31097730 cttttggcaaaatctcttctgttattaaa 31097758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 31572345 - 31572512
Alignment:
Q  108 atgtcactaaaaatattttgaatctattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaat 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31572345 atgtcactaaaaatattttgaatcaattatacaatttccttctatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaat 31572444  T
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagtaa 275  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  31572445 gttgcttttgtctactacacttacaatgtatatgacccgtgcggcagcacgggtggatgatccagtaa 31572512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 8700425 - 8700481
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  8700425 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 8700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 19596428 - 19596372
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  19596428 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtgga 19596372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 41663401 - 41663457
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  41663401 tttgtttttgtctactatatctacaatgtatatgacccatgcggcagcacgggtgga 41663457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 6120716 - 6120772
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  6120716 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 6120772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 18351715 - 18351771
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  18351715 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 18351771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 27944861 - 27944805
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  27944861 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 27944805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 31424173 - 31424229
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  31424173 tttgtttttgtctactacatctacaatgtatatgactcgtgcggcagcacgggtgga 31424229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 41664674 - 41664730
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  41664674 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 41664730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 44902245 - 44902301
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  44902245 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 44902301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 20544989 - 20545045
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||| | |  ||||||||||||||||| ||||||||||||||||||    
T  20544989 tttgtttttgtctaccatatctacaatgtatatgacccgtgcggcagcacgggtgga 20545045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 42442128 - 42442184
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||| ||||||||||    
T  42442128 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcaacacgggtgga 42442184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 22136316 - 22136278
Alignment:
Q  236 tatatgacccatgcggcagcacgggtggacgatctagta 274  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  22136316 tatatgacccgtgcggcaacacgggtggacgatctagta 22136278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 692267 - 692230
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgaccc 245  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  692267 tttgtttttgtctactacatttacaatgtatatgaccc 692230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 2988911 - 2988939
Alignment:
Q  234 tgtatatgacccatgcggcagcacgggtg 262  Q
    |||||||||||||||||||||||||||||    
T  2988911 tgtatatgacccatgcggcagcacgggtg 2988939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 31572299 - 31572327
Alignment:
Q  65 cttttggcaaaatctcttctgttattaaa 93  Q
    |||||||||||||||||||||||||||||    
T  31572299 cttttggcaaaatctcttctgttattaaa 31572327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 79195 - 79105
Alignment:
Q  150 tatagttgtatttaaaattatgacattaaaattataagttgggactgtattataaaattttgcttttgtctactacacttacaatgtatat 240  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||| ||   ||| ||||||||||||||||||||||| |||||||||||||    
T  79195 tatagttgtattcaaaatcatgacattaaagttataagtttggattgcgctattaaattttgcttttgtctactacatttacaatgtatat 79105  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 6121 - 6061
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| |||  ||||||||||||||||| ||||||||||||||||||  |||||||    
T  6121 ttttgtctacaacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 6061  T

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Target: scaffold0306 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 6131 - 6071
Alignment:
Q  213 ttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtggacgatctagt 273  Q
    |||||||||| |||  ||||||||||||||||| ||||||||||||||||||  |||||||    
T  6131 ttttgtctacaacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 6071  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 46438 - 46494
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  46438 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtgga 46494  T

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Target: scaffold0173 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 19511 - 19567
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||||||||  ||||||||||| ||||| | ||||||||||||||||    
T  19511 tttgtttttgtctactacatctacaatgtataggacccgtacggcagcacgggtgga 19567  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 149115 - 149059
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| |||||||||||| |  |||||| |||||||||| ||||||||||||||||||    
T  149115 tttgtttttgtctactatatctacaatttatatgacccgtgcggcagcacgggtgga 149059  T

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Target: scaffold0836 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 5343 - 5287
Alignment:
Q  208 tttgcttttgtctactacacttacaatgtatatgacccatgcggcagcacgggtgga 264  Q
    |||| ||||||||| || |  ||||||||||||| ||| ||||||||||||||||||    
T  5343 tttgtttttgtctattatatctacaatgtatatgtcccgtgcggcagcacgggtgga 5287  T

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