View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_200 (Length: 230)
Name: NF6819A_low_200
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_200 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42788921 - 42788698
Alignment:
| Q |
1 |
ttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788921 |
ttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
42788822 |
T |
|
| Q |
101 |
agtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaaagaagatgtaaggaaagaatagtggcaagctag |
200 |
Q |
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| T |
42788821 |
agtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaaagaagatgtaaggaaagaatagtggcaagctag |
42788722 |
T |
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| Q |
201 |
tatttgacaaattttattactatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42788721 |
tatttgacaaattttattactatt |
42788698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42798459 - 42798236
Alignment:
| Q |
1 |
ttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798459 |
ttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
42798360 |
T |
|
| Q |
101 |
agtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaaagaagatgtaaggaaagaatagtggcaagctag |
200 |
Q |
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| T |
42798359 |
agtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaaagaagatgtaaggaaagaatagtggcaagctag |
42798260 |
T |
|
| Q |
201 |
tatttgacaaattttattactatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42798259 |
tatttgacaaattttattactatt |
42798236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 47828714 - 47828785
Alignment:
| Q |
29 |
ttgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
100 |
Q |
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|||||||||||||| || | ||||||||||||| | ||||||| |||||||| | ||||||||||||||| |
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| T |
47828714 |
ttgaatatatctcctggatcttcttgtcattgttctgaacctgggtggtttaggatttgctttgctaatatg |
47828785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 34566583 - 34566447
Alignment:
| Q |
12 |
ttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatgagtgaacacac |
111 |
Q |
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||||||||||| | || | ||||| || || |||||||||||||||||| |||| ||||||||||| || || ||||| |||||||||||| | || |
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| T |
34566583 |
ttttgaatgaagttaagcttaatatttcaccagggtgttcttgtcattgttccgaacccggttggtttagggtttgttttgcaaatatgagtgaagaaac |
34566484 |
T |
|
| Q |
112 |
tttggaagttgcattgaaaagaatacgtaacttcatg |
148 |
Q |
| |
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| ||| ||||| | |||||||||||| | |||||| |
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| T |
34566483 |
acttgaacttgcactcaaaagaatacgtgatttcatg |
34566447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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