View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_207 (Length: 229)

Name: NF6819A_low_207
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_207
NF6819A_low_207
[»] chr8 (30 HSPs)
chr8 (2-193)||(17656943-17657137)
chr8 (9-194)||(10248493-10248682)
chr8 (15-143)||(30236119-30236251)
chr8 (9-132)||(31207364-31207490)
chr8 (1-137)||(36630781-36630921)
chr8 (1-136)||(9519443-9519582)
chr8 (39-134)||(15906672-15906767)
chr8 (1-136)||(24995393-24995532)
chr8 (1-136)||(34389003-34389142)
chr8 (1-136)||(32066293-32066432)
chr8 (2-136)||(37986856-37986994)
chr8 (20-113)||(15821400-15821497)
chr8 (38-193)||(35062442-35062597)
chr8 (38-139)||(10552254-10552354)
chr8 (40-138)||(32945699-32945797)
chr8 (38-134)||(17720706-17720801)
chr8 (41-138)||(12198065-12198162)
chr8 (41-138)||(12442493-12442590)
chr8 (64-136)||(41893399-41893470)
chr8 (73-136)||(16457459-16457522)
chr8 (70-138)||(41791260-41791328)
chr8 (63-102)||(40531242-40531281)
chr8 (38-108)||(12898300-12898370)
chr8 (75-113)||(20138448-20138486)
chr8 (64-102)||(33967337-33967375)
chr8 (78-124)||(3679471-3679517)
chr8 (16-122)||(18690391-18690501)
chr8 (63-108)||(23264716-23264761)
chr8 (68-101)||(36796621-36796654)
chr8 (84-137)||(38577787-38577840)
[»] chr4 (42 HSPs)
chr4 (1-193)||(25753116-25753312)
chr4 (13-194)||(53823361-53823546)
chr4 (8-228)||(22811067-22811289)
chr4 (38-193)||(2061679-2061834)
chr4 (8-228)||(48098284-48098507)
chr4 (1-189)||(39420958-39421150)
chr4 (7-150)||(49747478-49747624)
chr4 (64-193)||(38637174-38637302)
chr4 (64-193)||(41117908-41118037)
chr4 (38-154)||(46698764-46698881)
chr4 (38-153)||(38929812-38929927)
chr4 (9-136)||(8254979-8255110)
chr4 (9-136)||(8268397-8268528)
chr4 (12-138)||(16501688-16501816)
chr4 (38-123)||(19815235-19815320)
chr4 (38-138)||(12296160-12296260)
chr4 (38-137)||(31050659-31050758)
chr4 (1-132)||(30964385-30964520)
chr4 (40-138)||(35800476-35800574)
chr4 (77-228)||(16832928-16833078)
chr4 (38-196)||(19673086-19673243)
chr4 (1-136)||(4305669-4305808)
chr4 (1-137)||(2825728-2825867)
chr4 (49-143)||(6599936-6600030)
chr4 (56-137)||(28966870-28966951)
chr4 (38-126)||(19311351-19311437)
chr4 (44-111)||(21387227-21387294)
chr4 (13-134)||(24740103-24740226)
chr4 (64-108)||(39041300-39041344)
chr4 (126-193)||(49528145-49528212)
chr4 (64-102)||(40813813-40813851)
chr4 (70-122)||(30167576-30167628)
chr4 (64-128)||(36962622-36962685)
chr4 (63-99)||(53756766-53756802)
chr4 (64-97)||(37707392-37707425)
chr4 (64-108)||(2792300-2792344)
chr4 (169-209)||(19311299-19311339)
chr4 (68-108)||(26474851-26474891)
chr4 (64-102)||(10388572-10388610)
chr4 (66-103)||(12296061-12296098)
chr4 (70-102)||(17416541-17416573)
chr4 (71-138)||(43076996-43077066)
[»] scaffold0200 (1 HSPs)
scaffold0200 (11-194)||(19337-19524)
[»] chr1 (35 HSPs)
chr1 (2-193)||(27102135-27102331)
chr1 (38-193)||(6583157-6583312)
chr1 (1-136)||(41920397-41920535)
chr1 (37-138)||(17033570-17033672)
chr1 (40-189)||(34774858-34775007)
chr1 (1-114)||(9313309-9313426)
chr1 (38-178)||(32864517-32864657)
chr1 (1-136)||(31585758-31585897)
chr1 (1-137)||(46814464-46814603)
chr1 (38-153)||(19598621-19598736)
chr1 (1-136)||(5389419-5389558)
chr1 (38-136)||(24658914-24659012)
chr1 (1-136)||(30685902-30686041)
chr1 (1-136)||(46692817-46692956)
chr1 (9-193)||(16147507-16147698)
chr1 (20-122)||(27031852-27031958)
chr1 (38-105)||(7857638-7857705)
chr1 (1-137)||(24684475-24684614)
chr1 (44-123)||(38544749-38544828)
chr1 (16-138)||(4651739-4651864)
chr1 (69-189)||(10785405-10785524)
chr1 (38-193)||(42374148-42374304)
chr1 (1-113)||(24449951-24450067)
chr1 (38-136)||(5459146-5459244)
chr1 (38-135)||(50589206-50589303)
chr1 (51-108)||(15840938-15840995)
chr1 (42-132)||(46603381-46603472)
chr1 (126-228)||(31290926-31291027)
chr1 (61-134)||(27905420-27905493)
chr1 (64-108)||(30655571-30655615)
chr1 (76-134)||(9081506-9081563)
chr1 (64-102)||(38564912-38564950)
chr1 (66-107)||(42374049-42374090)
chr1 (144-228)||(16577352-16577435)
chr1 (64-108)||(33034672-33034716)
[»] chr7 (41 HSPs)
chr7 (8-193)||(8745104-8745293)
chr7 (8-208)||(24324723-24324928)
chr7 (9-228)||(6716643-6716865)
chr7 (121-228)||(44755657-44755764)
chr7 (38-193)||(42533194-42533348)
chr7 (11-228)||(1320748-1320969)
chr7 (38-193)||(3478337-3478492)
chr7 (1-90)||(44755571-44755663)
chr7 (10-147)||(16954606-16954748)
chr7 (38-137)||(6584894-6584993)
chr7 (10-145)||(16828924-16829064)
chr7 (1-136)||(38306205-38306344)
chr7 (40-138)||(12480873-12480971)
chr7 (10-136)||(10244135-10244265)
chr7 (41-137)||(34389950-34390046)
chr7 (1-136)||(3419654-3419793)
chr7 (38-122)||(13311824-13311908)
chr7 (1-137)||(3867060-3867200)
chr7 (61-136)||(9349757-9349832)
chr7 (15-138)||(11379122-11379250)
chr7 (1-137)||(41089745-41089885)
chr7 (41-143)||(46133268-46133371)
chr7 (9-136)||(47325883-47326014)
chr7 (9-122)||(33435062-33435178)
chr7 (38-138)||(38485541-38485640)
chr7 (38-153)||(47457003-47457118)
chr7 (38-137)||(35745824-35745923)
chr7 (38-136)||(37794974-37795072)
chr7 (1-105)||(25160759-25160867)
chr7 (38-136)||(5860286-5860384)
chr7 (45-138)||(23983187-23983280)
chr7 (63-137)||(48058651-48058725)
chr7 (53-134)||(9428105-9428186)
chr7 (38-193)||(36449069-36449224)
chr7 (64-102)||(46262151-46262189)
chr7 (65-99)||(17802851-17802885)
chr7 (64-102)||(27993568-27993606)
chr7 (64-102)||(35206725-35206763)
chr7 (75-113)||(44353585-44353623)
chr7 (38-152)||(22568093-22568208)
chr7 (64-98)||(25153231-25153265)
[»] chr6 (21 HSPs)
chr6 (1-228)||(20701710-20701940)
chr6 (38-193)||(32935280-32935435)
chr6 (13-138)||(26534712-26534842)
chr6 (39-193)||(9224027-9224182)
chr6 (40-138)||(26216015-26216112)
chr6 (69-194)||(13423482-13423607)
chr6 (9-228)||(3880505-3880712)
chr6 (40-136)||(21266100-21266196)
chr6 (1-112)||(16510323-16510438)
chr6 (2-136)||(3117438-3117576)
chr6 (38-138)||(12794099-12794200)
chr6 (40-136)||(21264973-21265069)
chr6 (15-131)||(33968615-33968736)
chr6 (107-194)||(15120537-15120624)
chr6 (50-108)||(34105410-34105468)
chr6 (64-108)||(34090374-34090418)
chr6 (54-149)||(15944020-15944116)
chr6 (64-124)||(34092806-34092866)
chr6 (64-99)||(7546464-7546499)
chr6 (78-123)||(32316393-32316438)
chr6 (64-100)||(12129228-12129264)
[»] chr5 (25 HSPs)
chr5 (1-196)||(7195178-7195375)
chr5 (2-194)||(13954174-13954369)
chr5 (1-193)||(14302371-14302567)
chr5 (1-189)||(33258827-33259019)
chr5 (9-193)||(8297420-8297608)
chr5 (9-192)||(7391979-7392160)
chr5 (2-228)||(26045871-26046100)
chr5 (1-136)||(34378042-34378181)
chr5 (1-193)||(25991951-25992147)
chr5 (1-136)||(698305-698444)
chr5 (68-194)||(21402777-21402903)
chr5 (16-122)||(24072278-24072388)
chr5 (38-195)||(39184124-39184283)
chr5 (60-136)||(22675322-22675398)
chr5 (42-137)||(27713058-27713153)
chr5 (1-135)||(18593187-18593325)
chr5 (39-132)||(39024452-39024545)
chr5 (48-134)||(23426339-23426425)
chr5 (38-132)||(31721662-31721756)
chr5 (38-138)||(8730902-8731003)
chr5 (38-135)||(17854066-17854163)
chr5 (53-137)||(29087481-29087565)
chr5 (63-106)||(12046265-12046308)
chr5 (70-153)||(25658132-25658217)
chr5 (64-96)||(25341709-25341741)
[»] scaffold0119 (1 HSPs)
scaffold0119 (11-194)||(42078-42265)
[»] chr2 (39 HSPs)
chr2 (11-194)||(1269437-1269624)
chr2 (10-193)||(37770583-37770769)
chr2 (7-193)||(13337224-13337414)
chr2 (50-193)||(34230198-34230341)
chr2 (15-228)||(10173484-10173701)
chr2 (1-209)||(41086722-41086923)
chr2 (1-136)||(39338863-39339002)
chr2 (38-203)||(14106451-14106620)
chr2 (50-137)||(14405195-14405282)
chr2 (53-191)||(22885076-22885214)
chr2 (39-137)||(7874277-7874375)
chr2 (56-135)||(16959985-16960064)
chr2 (16-136)||(4471883-4472006)
chr2 (38-228)||(16952289-16952479)
chr2 (38-228)||(17022954-17023144)
chr2 (38-228)||(17060260-17060450)
chr2 (75-193)||(7695985-7696102)
chr2 (56-153)||(15126391-15126488)
chr2 (65-193)||(2062901-2063029)
chr2 (38-137)||(387158-387257)
chr2 (42-137)||(18681054-18681149)
chr2 (58-191)||(33788575-33788708)
chr2 (38-138)||(25504904-25505005)
chr2 (38-135)||(31902413-31902510)
chr2 (38-153)||(17079154-17079270)
chr2 (1-105)||(10524041-10524149)
chr2 (38-191)||(27739960-27740113)
chr2 (1-111)||(17105355-17105470)
chr2 (60-137)||(5254263-5254340)
chr2 (52-112)||(23650384-23650444)
chr2 (64-102)||(4162052-4162090)
chr2 (75-138)||(3745356-3745420)
chr2 (62-102)||(9560820-9560860)
chr2 (64-99)||(23665439-23665474)
chr2 (74-124)||(27880139-27880189)
chr2 (63-139)||(915447-915523)
chr2 (16-122)||(15710666-15710776)
chr2 (64-105)||(36276200-36276241)
chr2 (64-108)||(34143079-34143123)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-208)||(58071-58282)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-208)||(36651-36864)
[»] chr3 (35 HSPs)
chr3 (39-193)||(14879421-14879576)
chr3 (1-193)||(37123326-37123521)
chr3 (1-222)||(25647628-25647854)
chr3 (7-152)||(14193889-14194041)
chr3 (63-191)||(33143891-33144020)
chr3 (38-153)||(47945691-47945806)
chr3 (12-193)||(14755205-14755389)
chr3 (1-137)||(19176447-19176586)
chr3 (45-138)||(1652882-1652975)
chr3 (14-194)||(823374-823559)
chr3 (68-194)||(39021217-39021342)
chr3 (38-137)||(5556555-5556655)
chr3 (1-136)||(20611727-20611866)
chr3 (2-208)||(40023496-40023706)
chr3 (52-137)||(43012374-43012459)
chr3 (64-136)||(17550968-17551040)
chr3 (1-137)||(23328347-23328486)
chr3 (39-193)||(27398944-27399099)
chr3 (39-137)||(9584050-9584148)
chr3 (16-138)||(30935386-30935512)
chr3 (1-105)||(34475783-34475891)
chr3 (38-137)||(45398781-45398880)
chr3 (1-136)||(2392504-2392643)
chr3 (1-113)||(2394274-2394390)
chr3 (38-138)||(25594516-25594616)
chr3 (63-102)||(20710740-20710779)
chr3 (64-114)||(24099347-24099397)
chr3 (64-110)||(30127273-30127319)
chr3 (38-136)||(45163838-45163938)
chr3 (38-101)||(31482869-31482932)
chr3 (127-189)||(28937659-28937721)
chr3 (7-73)||(4463997-4464066)
chr3 (64-113)||(31424247-31424296)
chr3 (64-113)||(2782090-2782139)
chr3 (64-108)||(19295891-19295935)
[»] scaffold1613 (1 HSPs)
scaffold1613 (44-123)||(1028-1107)
[»] scaffold0068 (1 HSPs)
scaffold0068 (12-136)||(35770-35897)
[»] scaffold0620 (2 HSPs)
scaffold0620 (64-108)||(3841-3885)
scaffold0620 (64-124)||(8140-8200)
[»] scaffold0062 (2 HSPs)
scaffold0062 (16-122)||(47052-47162)
scaffold0062 (16-122)||(59578-59688)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 17657137 - 17656943
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccg---tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcg 98  Q
    |||| |||||||||||||||||||| |||||||   || ||||||||||||| | |||| |||||||| ||||||| |||||||||||||||||||||||    
T  17657137 tttggcgtgatttggtgtttctctgatgtaccgggatgaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcg 17657038  T
Q  99 ggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||  ||| |||| |||||||||||||||||||||||||||||    
T  17657037 ggagtcagttctttggctcaagtttggttttggactttttatggtttctttcggtggatcggaggtcgataggtggtggaagctgaatgatcttt 17656943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 10248682 - 10248493
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    |||||||||||||||||||||||||| |||    ||||| |||||| |||| |||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  10248682 tgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtc 10248583  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||||| ||||||||| ||||  ||||| |||||||||||| |||  ||| |||| ||  |||||||||||||||| |||||||||    
T  10248582 agttctttggctcaagtttggttttttgctttatatggtttcttttggtggatcggaggccgcgaggtggtggaagctgattgatctttt 10248493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 30236251 - 30236119
Alignment:
Q  15 ggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    ||||||||||||||| |||| |||    ||||||||||||||||||||  | |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  30236251 ggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttct 30236152  T
Q  111 ttggatcaagtttgattttgggctttttatggt 143  Q
    |||| ||||||||| ||||||||||||| ||||    
T  30236151 ttggttcaagtttggttttgggctttttttggt 30236119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 31207490 - 31207364
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg---gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    ||||||||| |||||||||||||||  |||   ||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  31207490 tgatttggtttttctctggtgtaccaggggcgagggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtca 31207391  T
Q  106 gttctttggatcaagtttgattttggg 132  Q
    ||||||||  ||||||| |||||||||    
T  31207390 gttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 36630781 - 36630921
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||| |||||||||| |||    ||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||    
T  36630781 gtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagat 36630880  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||| ||||||||||||  || |||||| ||||||||||||    
T  36630881 cgggtgtcagttctttgactctagtttgtttttgggctttt 36630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9519443 - 9519582
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||| |||    ||||||||| || ||||||| ||| ||||| |||||||||||| ||||||||||||||    
T  9519443 gtttgacttgatttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagat 9519542  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||| | |||||||||||    
T  9519543 cgggagtcagttctttgactcaagttggtttttgggcttt 9519582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 15906672 - 15906767
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    |||||||| | || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  15906672 gggtgcccgtttggtttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24995532 - 24995393
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||| | |||    ||||| | | || ||||||| ||| |||||||||||||||||||||||||||||||||    
T  24995532 gtttgacttgatttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagat 24995433  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||| | |||||||||||    
T  24995432 cgggagtcagttctttgactcaagttggtttttgggcttt 24995393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 34389142 - 34389003
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||  |||    ||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||    
T  34389142 gtttgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagat 34389043  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |  ||||||||||||||  ||||||| | |||||||||||    
T  34389042 caagagtcagttctttgactcaagttggtttttgggcttt 34389003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32066432 - 32066293
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||||| |||||||| |||    ||||||||| || ||||||| ||| |||||||||||||||||||||||||||||| ||    
T  32066432 gtttgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaat 32066333  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||| ||||||  || |||| | |||||||||||    
T  32066332 cgggagtcagctctttgactccagttggtttttgggcttt 32066293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 37986994 - 37986856
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    |||||| ||||||||| |||||||||||||||| |||    ||||||||| || |||||||  || ||||||||||||| |||| |||||||||||||||    
T  37986994 tttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatc 37986895  T
Q  98 gggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||||||  ||||||| | ||||| |||||    
T  37986894 gggagtcagttctttgactcaagttggtttttgtgcttt 37986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 15821497 - 15821400
Alignment:
Q  20 ttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg 113  Q
    ||||||||||||||| |||    ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  15821497 ttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttg 15821400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 35062442 - 35062597
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||  ||||||||||| || ||||||||||||||||||  |||||||||||||||| ||||||||||| | | || |||||| ||||||||||||    
T  35062442 ggggtgcctctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagttctcttgttctagtttggttttgggctttt 35062541  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    || |  ||| ||||||  ||||||||  |   ||||||||||| ||||||||||||    
T  35062542 taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgatcttt 35062597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 10552254 - 10552354
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| |||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||||| ||| || |||||| ||||| ||||||    
T  10552254 ggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggttctagtttggttttgtgctttt 10552352  T
Q  138 ta 139  Q
    ||    
T  10552353 ta 10552354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 32945797 - 32945699
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||| ||||||||||| | || |||| | |||||| ||||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  32945797 ggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggcttttt 32945699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 17720801 - 17720706
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    ||||||||  |||| |||||||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||| |||| || | |||||||||    
T  17720801 ggggtgcctgtctggtttggtcctaaagtatggtgggctgatcgcttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggct 17720706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 12198162 - 12198065
Alignment:
Q  41 gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    |||| ||||| |||||||| | ||||||||||| |||||||||||| |||  | || ||||||||||||||||| ||||||||| ||||| |||||||    
T  12198162 gtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagcttttt 12198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 12442590 - 12442493
Alignment:
Q  41 gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    |||| ||||| |||||||| | ||||||||||| |||||||||||| |||  | || ||||||||||||||||| ||||||||| ||||| |||||||    
T  12442590 gtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagcttttt 12442493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 41893470 - 41893399
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  41893470 agtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaag-ttgtttttgggcttt 41893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 16457522 - 16457459
Alignment:
Q  73 ggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| | |||| ||||||    
T  16457522 ggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggcttt 16457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 41791328 - 41791260
Alignment:
Q  70 gtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||| ||||| ||||||||||||||||| |||||| |||||||| ||||||||  |||||| ||||||    
T  41791328 gtgggtcgatcgcttttgattcgagatcgagagtcacttctttggttcaagtttagttttggacttttt 41791260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 40531242 - 40531281
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  40531242 aagtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 12898370 - 12898300
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||  | |||||||  || |||||||||  ||||||||||||||||||||||| ||||||||||    
T  12898370 ggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagtt 12898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 20138448 - 20138486
Alignment:
Q  75 ccgatcacttttgattcgagatcgggagtcagttctttg 113  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttg 20138486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 33967337 - 33967375
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  33967337 agtctggtgggccgatcacttttgattcgagatcaggag 33967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 3679471 - 3679517
Alignment:
Q  78 atcacttttgattcgagatcgggagtcagttctttggatcaagtttg 124  Q
    ||||||||||||||||||||||||||| || |||||  |||||||||    
T  3679471 atcacttttgattcgagatcgggagtcggtgctttgattcaagtttg 3679517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 18690391 - 18690501
Alignment:
Q  16 gtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| ||||    || ||||||||||||||||| |  ||  | ||||||||  || |||||||||||||||||||||  | |||||||||    
T  18690391 gtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctt 18690490  T
Q  112 tggatcaagtt 122  Q
    | | |||||||    
T  18690491 tagttcaagtt 18690501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 23264716 - 23264761
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||| ||| || |||| ||||||||||||||||||||||||||    
T  23264716 aagtctgatggacctatcaattttgattcgagatcgggagtcagtt 23264761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 36796621 - 36796654
Alignment:
Q  68 tggtgggccgatcacttttgattcgagatcggga 101  Q
    |||| |||||||||||||||||||||||||||||    
T  36796621 tggttggccgatcacttttgattcgagatcggga 36796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 38577840 - 38577787
Alignment:
Q  84 tttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||||||||| |||||||||| | ||||| | |||||| |||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttggactttt 38577787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 25753116 - 25753312
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||| |||||||||||||||||||||    || || |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  25753116 gtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagat 25753215  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||  ||| |||| |||||||  ||||||||||||||||||||    
T  25753216 cgggagtcagttctttggctcaagtttgattttgggctttttattgtttctttcggtggatcggaggtcgataggcagtggaagctgaatgatcttt 25753312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 53823546 - 53823361
Alignment:
Q  13 ttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||||||||||||||    || |||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  53823546 ttggtgtttctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagtt 53823447  T
Q  109 ctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||  |||  ||| ||| |||||||||||| ||| |||||||||    
T  53823446 ctttggctcaagtttggttttgggttttttatggtttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatctttt 53823361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 22811289 - 22811067
Alignment:
Q  8 gtgatttggtgtttctctggtgtaccgtgg---ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    |||||||||||||||||||||||| || ||   || ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  22811289 gtgatttggtgtttctctggtgtatcggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtc 22811190  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagt 204  Q
    |||||||||| ||||||||| |||| ||||||||||||||||| ||| |  ||  ||||  || |||||||||||| ||||   |||| |||||| |||     
T  22811189 agttctttggctcaagtttggttttaggctttttatggtttctctcgatggattggaggttgagaggtggtggaagttgaaatgtcttctggttaggag- 22811091  T
Q  205 tttttcggaggtggctcaactttg 228  Q
    |||| |||| |||||||| |||||    
T  22811090 ttttgcggatgtggctcagctttg 22811067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 2061834 - 2061679
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||    
T  2061834 ggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttggatcagttttgattttgggctttt 2061735  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     ||| |||||||||||  ||| |||| ||| |||||||||||| ||||||||||||    
T  2061734 gatgatttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatcttt 2061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 48098284 - 48098507
Alignment:
Q  8 gtgatttggtgtttctctggtgtaccgtggggg----gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagt 103  Q
    ||||||||||||||||| ||||||||| ||| |    ||||||||||||||||||| ||||| | | |||||| |||||||||| |||||||||||||||    
T  48098284 gtgatttggtgtttctcaggtgtaccgagggtgagaggtgcccttctgatttggtcataaagcccgatgggcctatcacttttgtttcgagatcgggagt 48098383  T
Q  104 cagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagag 203  Q
    |||||  |||||| ||||||| ||||||||||||||| |||||||||| |  |||  ||| ||| |||||||||||| |||| |||||||  | || |||    
T  48098384 cagtttgttggattaagtttggttttgggctttttatagtttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggag 48098483  T
Q  204 ttttttcggaggtggctcaactttg 228  Q
      |||||||| ||||||||||||||    
T  48098484 -cttttcggatgtggctcaactttg 48098507  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 39421150 - 39420958
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||||||||||||||||  ||||| | |||    ||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  39421150 gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggtcttatagcctggtgggccgatcacttttgattcgagat 39421051  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgat 189  Q
    ||||||||| ||| || |||||  |||| |||||||||||||||||||| |||||||  ||| |||  ||| ||||||||||| |||| ||||    
T  39421050 cgggagtcaattccttagatcagttttggttttgggctttttatggtttttttcggtggatcggagatcgagaggtggtggaaactgattgat 39420958  T

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Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 49747478 - 49747624
Alignment:
Q  7 cgtgatttggtgtttctctggtgtaccgtgggg---ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagt 103  Q
    |||||||||||||||||||| ||||||  || |   || |||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||    
T  49747478 cgtgatttggtgtttctctgatgtaccagggtgaatggcgcccttttgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagt 49747577  T
Q  104 cagttctttggatcaagtttgattttgggctttttatggtttctttc 150  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  49747578 cagttcttttgatcaagtttggttttgagctttttatgggttctttc 49747624  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 38637302 - 38637174
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagagg 163  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  | |||||||||||||||||||||||| |||  ||| ||||    
T  38637302 agtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtagg-ttttgggctttttatggtttcttttggtggatcggagg 38637204  T
Q  164 acgataggtggtggaagctgaatgatcttt 193  Q
     ||| |||||||||||||||||||||||||    
T  38637203 tcgagaggtggtggaagctgaatgatcttt 38637174  T

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Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 41118037 - 41117908
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagagg 163  Q
    ||||||| |||  ||||||||||||||||||||||| ||| |||||||||| |||| || | |||||||||||||||||||||||||| |  ||||||||    
T  41118037 agtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggtttctttcgatggatcagagg 41117938  T
Q  164 acgataggtggtggaagctgaatgatcttt 193  Q
     ||| |||||||||||||||||||||||||    
T  41117937 tcgagaggtggtggaagctgaatgatcttt 41117908  T

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Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 46698881 - 46698764
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    ||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |    
T  46698881 ggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgt 46698782  T
Q  137 ttatggtttctttcggta 154  Q
    ||| |  |||||||||||    
T  46698781 ttaggtgttctttcggta 46698764  T

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Target: chr4; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 38929812 - 38929927
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| |||| || |||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||    
T  38929812 ggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggc-ttt 38929910  T
Q  138 tatggt-ttctttcggt 153  Q
    |||||| ||||||||||    
T  38929911 tatggtgttctttcggt 38929927  T

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Target: chr4; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 8254979 - 8255110
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||| |||||||||||||||| |||    ||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||| | ||||    
T  8254979 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtc 8255078  T
Q  105 agttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||  ||||||| | |||||||||||    
T  8255079 agttctttgactcaagttggtttttgggcttt 8255110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 8268397 - 8268528
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||| |||||||||||||||| |||    ||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||| | ||||    
T  8268397 tgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtc 8268496  T
Q  105 agttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||  ||||||| | |||||||||||    
T  8268497 agttctttgactcaagttggtttttgggcttt 8268528  T

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Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 16501688 - 16501816
Alignment:
Q  12 tttggtgtttctctggtgtaccgtggggg--gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttc 109  Q
    ||||||||||||||||||  ||| ||| |  ||| ||||| |||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| ||    
T  16501688 tttggtgtttctctggtggtccgggggtgtggtggccttccgatttgatcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagctc 16501787  T
Q  110 tttggatcaagtttgattttgggcttttt 138  Q
    ||||| || |||||| |||||||||||||    
T  16501788 tttggttctagtttggttttgggcttttt 16501816  T

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Target: chr4; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 19815320 - 19815235
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagttt 123  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||| ||||||||    
T  19815320 ggggtgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagttt 19815235  T

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Target: chr4; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 12296160 - 12296260
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| |||| ||||||||| |||||||||| ||||| | ||||||||||||||||   |||||||||||||| ||||||||||||||||||||||    
T  12296160 ggggtgcccctctggtttggtcctgaagtctggtgtgccgagcgcttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggctttt 12296259  T
Q  138 t 138  Q
    |    
T  12296260 t 12296260  T

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Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 31050758 - 31050659
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |  |||| | ||||||||||||    
T  31050758 ggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggctttt 31050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30964385 - 30964520
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||| |||    ||||||||| || ||||||| ||| | |||| |||||||||||||||||||||| |||    
T  30964385 gtttgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgat 30964484  T
Q  97 cgggagtcagttctttggatcaagtttgattttggg 132  Q
    |||||||| ||||||||  ||||||| | |||||||    
T  30964485 cgggagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 35800476 - 35800574
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||||||||||||||||| || ||||||||||  |||||| |||||||||||||||||| |||||||||||||  || |||||| |||||||||||||    
T  35800476 ggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggcttttt 35800574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 16833078 - 16832928
Alignment:
Q  77 gatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtg 176  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||  |||||||||||||||||||||||| ||   || || | | | ||||| |     
T  16833078 gatcacttttgattcgagatcggaagtcattttgttggatcaagtttggatttgggctttttatggtttctttcagtggttcggaagtcaagaggtgatt 16832979  T
Q  177 gaagctgaatgatcttttggttaagagttttttcggaggtggctcaactttg 228  Q
    ||||||||||||||||| || || |||  |||||||| ||||||||||||||    
T  16832978 gaagctgaatgatctttgggatatgag-cttttcggatgtggctcaactttg 16832928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 19673086 - 19673243
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||| ||||||||||||||||||||| ||  || ||||| |||||||||| |||||||||||||||| ||||||||  ||||||| ||||    
T  19673086 ggggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtttagttttggg-tttt 19673183  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttgg 196  Q
      |||| ||||||||||  |||   || |||||| ||||||||||| |||||| ||||||    
T  19673184 gttggtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttgg 19673243  T

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Target: chr4; HSP #22
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4305669 - 4305808
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtgggg----ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    |||||||  ||||| || |||||||||||||||| |||     |||||||| || ||||||| ||| ||||||||||| |||||||||||||||||||||    
T  4305669 gtttgactggatttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagat 4305768  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||| |||||||||  ||||||| | |||| ||||||    
T  4305769 cgggagttagttctttgtctcaagttggtttttaggcttt 4305808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 2825728 - 2825867
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| |||| ||||||| ||||||||||||| |||    |||||| || |||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  2825728 gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagat 2825826  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| |||  ||||||| ||||  | | ||||||||||||    
T  2825827 cgggaatcacctctttggctcaatgtggtttttgggctttt 2825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 6600030 - 6599936
Alignment:
Q  49 ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggt 143  Q
    |||||||||  ||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||  ||||||||  ||||||||| ||||||||    
T  6600030 ctgatttggctctagagtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttgttttgggctatttatggt 6599936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 28966870 - 28966951
Alignment:
Q  56 ggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||| ||||||||| || |||||  |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  28966870 ggtcctgaagtctggtagggcgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggttttgggctttt 28966951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 19311437 - 19311351
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgat 126  Q
    |||||| ||||||||||||||  ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  19311437 ggggtgtccttctgatttggttttaa-gtctggtgggtcgatcacttttgattcgaga-cgggagtcagttatttggatcatgtttgat 19311351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 21387294 - 21387227
Alignment:
Q  44 cccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    ||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  21387294 cccttctgatttggtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttctt 21387227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 24740226 - 24740103
Alignment:
Q  13 ttggtgtttctctggtgtaccgtggggg--gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    ||||||||||| ||||| |||| ||| |  ||| || ||||| |||||||  | |||||||||||||||| ||| | |||| |||||||||||||||| |    
T  24740226 ttggtgtttctttggtggaccgagggtgaagtggccctctgagttggtcccgatgtctggtgggccgatcgcttataattcaagatcgggagtcagttat 24740127  T
Q  111 ttggatcaagtttgattttgggct 134  Q
    |||| |||| |||| |||||||||    
T  24740126 ttggttcaaatttggttttgggct 24740103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 39041344 - 39041300
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcagtt 39041300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 49528145 - 49528212
Alignment:
Q  126 ttttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||||||||||||||||||||||||||||  ||| |||| ||  |||||||||||| ||||||||||||    
T  49528145 ttttgggctttttatggtttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatcttt 49528212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 40813851 - 40813813
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40813851 agtctggtgggccgatcacttttgattcgagatcgggag 40813813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 30167628 - 30167576
Alignment:
Q  70 gtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtt 122  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||  |||||||    
T  30167628 gtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagtt 30167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 36962685 - 36962622
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattt 128  Q
    |||||||||||||||| ||||||||||||||||| |||||||| ||||||  ||||||| |||||    
T  36962685 agtctggtgggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttggattt 36962622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 53756766 - 53756802
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgg 99  Q
    |||||||||||||||||||||||||||||||||||||    
T  53756766 aagtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 37707425 - 37707392
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatc 97  Q
    ||||||||||||||||||||||||||||||||||    
T  37707425 agtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 2792344 - 2792300
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||    
T  2792344 agtctagtaggccgatcacttttgattcgagatcggaagtcagtt 2792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 19311339 - 19311299
Alignment:
Q  169 aggtggtggaagctgaatgatcttttggttaagagtttttt 209  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  19311339 aggtggtggaagctgtatgatcttttggttaagagcttttt 19311299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 26474851 - 26474891
Alignment:
Q  68 tggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  26474851 tggtgggccgatcacttttgattcgagatcgagagttagtt 26474891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 10388572 - 10388610
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  10388572 agtcttgtgggccgatcacttttgattcgaggtcgggag 10388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 12296061 - 12296098
Alignment:
Q  66 tctggtgggccgatcacttttgattcgagatcgggagt 103  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  12296061 tctggtgggccgattacttttgcttcgagatcgggagt 12296098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 17416573 - 17416541
Alignment:
Q  70 gtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||| ||||    
T  17416573 gtgggccgatcacttttgattcgagatcaggag 17416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 43076996 - 43077066
Alignment:
Q  71 tgggccgatcacttttgattcgagatcgggagtcag---ttctttggatcaagtttgattttgggcttttt 138  Q
    ||||||||||  |||| ||||||||||| ||||||    |||||||| ||||||||| |||||||||||||    
T  43076996 tgggccgatcgttttttattcgagatcgagagtcaacttttctttggttcaagtttgcttttgggcttttt 43077066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 19337 - 19524
Alignment:
Q  11 atttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 106  Q
    ||||| |||||||||||| ||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19337 atttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcag 19436  T
Q  107 ttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||  ||| |||| ||| || ||||||||||||||| |||||||    
T  19437 ttctttggctcaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagagttggtggaagctgaataatctttt 19524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 27102135 - 27102331
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccgtg-----gggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    |||| |||||||||||||||||||||||||||| |     ||||||||||||||| |||||||  |||||||   |||||||||||||||||||||||||    
T  27102135 tttggcgtgatttggtgtttctctggtgtaccgagggtgagggggtgcccttctgttttggtctcaaagtctaacgggccgatcacttttgattcgagat 27102234  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  ||| |||| ||| |||||||||||||||||||||||||    
T  27102235 cgggagtcagttctttggatcaagtttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 6583312 - 6583157
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||  |||| ||||  ||||||    
T  6583312 ggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttggatcagttttggttttttgctttt 6583213  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||||||||||||||||  ||| |||| ||| |||||||||||||||| ||||||||    
T  6583212 tatggtttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatcttt 6583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 41920397 - 41920535
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtgg---ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    ||||||| ||||||||| |||||||||||||| | ||   |||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  41920397 gtttgacttgatttggtttttctctggtgtactggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatc 41920496  T
Q  98 gggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||||||  ||||||| |||||||||||||    
T  41920497 gggagtcagttctttgactcaagttggattttgggcttt 41920535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 17033570 - 17033672
Alignment:
Q  37 gggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggctt 135  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  17033570 gggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggctt 17033669  T
Q  136 ttt 138  Q
    |||    
T  17033670 ttt 17033672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 34774858 - 34775007
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag-ttctttggatcaagtttgattttgggcttttt 138  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||  |||||||||||||    
T  34774858 ggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtttttttggctcaagtttagttttgggcttttt 34774956  T
Q  139 atggtttctttcggtatatcagaggacgataggtggtggaagctgaatgat 189  Q
    |||||||||||||||  ||  ||||  || |||||||||||||||| ||||    
T  34774957 atggtttctttcggtgaattggaggttgagaggtggtggaagctgattgat 34775007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9313426 - 9313309
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgta----ccgtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| ||||||||||||||||||| |||||     |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9313426 gtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagat 9313327  T
Q  97 cgggagtcagttctttgg 114  Q
    ||||||||||||||||||    
T  9313326 cgggagtcagttctttgg 9313309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 32864657 - 32864517
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||  ||||||||| ||||||||||||    
T  32864657 ggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggctttt 32864558  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtgga 178  Q
    ||||||||||||  ||  |||||||| ||  ||||||||||    
T  32864557 tatggtttctttttgtggatcagaggtcgggaggtggtgga 32864517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 31585897 - 31585758
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtac----cgtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||||||||||||     ||| |||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||    
T  31585897 gtttgacttgatttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagat 31585798  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||| | |||||||||||    
T  31585797 cgggagtcagttctttgactcaagttggtttttgggcttt 31585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 46814603 - 46814464
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| |||| ||||||| ||||||||||||| |||    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  46814603 gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagat 46814505  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| | ||||| ||||||| | |||| |||||||    
T  46814504 cgggagtcagctttttggctcaagttggttttttggctttt 46814464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 19598621 - 19598736
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| |||| || |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  19598621 ggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg-tttt 19598719  T
Q  138 tatggt-ttctttcggt 153  Q
    |||||| ||||||||||    
T  19598720 tatggtgttctttcggt 19598736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5389558 - 5389419
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||| | |||||||||||||||| |||    ||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||    
T  5389558 gtttgacttgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagat 5389459  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||||| |||||||||||    
T  5389458 cgggagtcagttctttgactcaagtttgtttttgggcttt 5389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 24658914 - 24659012
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||| | |||||||||||    
T  24658914 ggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggcttt 24659012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 30686041 - 30685902
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||  |||    ||||||||| || ||||||| ||| ||||| ||||||||||||||||||||| |||||    
T  30686041 gtttgacttgatttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagat 30685942  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||| | |||||||||||    
T  30685941 cgggagtcagttctttgactcaagttggcttttgggcttt 30685902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 46692956 - 46692817
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtgg----ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||| | |||||||||||||||| ||    | |||||||| || |||||||  || |||||||||||||||||||||||||||||||||    
T  46692956 gtttgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagat 46692857  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||| |||||||||| ||||||| | |||||||||||    
T  46692856 cgggagttagttctttggctcaagttggtttttgggcttt 46692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 16147507 - 16147698
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggggg----gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||||||||||| | |||||| ||| |    || |||||||| ||||||| | |||| ||||||| |||| | ||||||||| | ||||||||||    
T  16147507 tgatttggtgtttctctagcgtaccgggggtgagaggttcccttctgttttggtcgttaagtatggtgggacgatgaattttgattcaatatcgggagtc 16147606  T
Q  105 agttctttggatcaagtttgattttgggc-tttttatgg--tttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||| |||||||||||||||| | |||||||||  |||||||||||| ||| ||||  || |||||||| ||| ||||||||||||    
T  16147607 agttctttgggtcaagtttgattttggacttttttatggtatttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatcttt 16147698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 27031958 - 27031852
Alignment:
Q  20 ttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgga 115  Q
    ||||||||||||||| |||    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||     
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  116 tcaagtt 122  Q
    |||||||    
T  27031858 tcaagtt 27031852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 7857638 - 7857705
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7857638 ggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24684614 - 24684475
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||| |||    ||||||||| || ||||| | ||||||||||||||||||||||||||| |||||||||    
T  24684614 gtttgacttgatttggt-tttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagat 24684516  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||  ||||||||||||  || |||| | ||||||||||||    
T  24684515 cggatgtcagttctttgactctagttggtttttgggctttt 24684475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 38544828 - 38544749
Alignment:
Q  44 cccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagttt 123  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38544828 cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttt 38544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 4651739 - 4651864
Alignment:
Q  16 gtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    ||||||||||||||||||| |||    |||||||||||||| || || |  |||||||| ||||||||||||||||||||||||||||||||||| |||     
T  4651739 gtgtttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcag-tctc 4651837  T
Q  112 tggatcaagtttgattttgggcttttt 138  Q
    ||| || |||||| |||||||||||||    
T  4651838 tggttctagtttggttttgggcttttt 4651864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 10785524 - 10785405
Alignment:
Q  69 ggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgat 168  Q
    ||||||||| | | ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| |||||||   || |||| ||      
T  10785524 ggtgggccggttaattttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggctttttatgattt-tttcggtggttcggaggtcgcg 10785426  T
Q  169 aggtggtggaagctgaatgat 189  Q
    |||||||||||||||||||||    
T  10785425 aggtggtggaagctgaatgat 10785405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 42374148 - 42374304
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    |||||||||||||||||||||| |   ||||||||| |||||| ||||||||| ||||||||||||||||  ||||| ||||| |||| ||||||||||     
T  42374148 ggggtgcccttctgatttggtcatgttgtctggtggaccgatcgcttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttg 42374247  T
Q  137 ttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||  |  ||||||||| ||| | |||   || |||||||||||||||| ||||||||    
T  42374248 tttggcgttctttcggcataccggagattgagaggtggtggaagctgattgatcttt 42374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 24450067 - 24449951
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| || |||||| |||||||||||||||| |||    ||||||||| ||  |||||| ||| ||| ||||||||||||||||||||||| |||||    
T  24450067 gtttgacttggtttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagat 24449968  T
Q  97 cgggagtcagttctttg 113  Q
    ||| |||||||||||||    
T  24449967 cggaagtcagttctttg 24449951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 5459146 - 5459244
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||   |||||||||||    
T  5459146 ggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttgatttttgggcttt 5459244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 50589303 - 50589206
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    ||||||||| |||| || |||||| ||||| ||||||| |||| |||||||||||| |||||||| |||||||||||  |||||||| ||||||||||    
T  50589303 ggggtgcccgtctggttgggtcctgaagtccggtgggctgatcgcttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggctt 50589206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 15840995 - 15840938
Alignment:
Q  51 gatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    |||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtt 15840938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 46603381 - 46603472
Alignment:
Q  42 tgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaa-gtttgattttggg 132  Q
    |||||| |||||| |||| |  |||||||||||||  || ||||||||||||||||| ||||||||||||||| ||||  ||||||||||||    
T  46603381 tgccctcctgattaggtcatgtagtctggtgggccattcgcttttgattcgagatcgagagtcagttctttggttcaatttttgattttggg 46603472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 31291027 - 31290926
Alignment:
Q  126 ttttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggctcaact 225  Q
    ||||||||||||||||||||||||||||  ||| |||| ||| |||||||||||| ||  |||||||| || || |||  |||||||| |||||||| ||    
T  31291027 ttttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggag-cttttcggatgtggctcagct 31290929  T
Q  226 ttg 228  Q
    |||    
T  31290928 ttg 31290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 27905420 - 27905493
Alignment:
Q  61 taaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    ||||||||||||| ||||||||||||||||||||||| | ||| |||||||||  ||| ||||  |||||||||    
T  27905420 taaagtctggtggaccgatcacttttgattcgagatcagaagttagttctttgattcatgttttgttttgggct 27905493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 30655571 - 30655615
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  30655571 agtctagtgggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 9081563 - 9081506
Alignment:
Q  76 cgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    ||||||||||||||||||||||||||| |||| |||| | ||||||||| |||||||||    
T  9081563 cgatcacttttgattcgagatcgggagccagtgctttag-tcaagtttgcttttgggct 9081506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 38564912 - 38564950
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  38564912 agtctcgtgggccgatcgcttttgattcgagatcgggag 38564950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 42374049 - 42374090
Alignment:
Q  66 tctggtgggccgatcacttttgattcgagatcgggagtcagt 107  Q
    |||||||| ||| | |||||||||||||||||||||||||||    
T  42374049 tctggtggaccggttacttttgattcgagatcgggagtcagt 42374090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 16577352 - 16577435
Alignment:
Q  144 ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggctcaactttg 228  Q
    ||||||||||| ||  ||||  || ||||||||||||||||||||||||| |  || |||  |||||||| ||||||||||||||    
T  16577352 ttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggag-cttttcggatgtggctcaactttg 16577435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 33034716 - 33034672
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||||    
T  33034716 agtctggtgggtcgatcacttctgattcgagatcgaaagtcagtt 33034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 8745104 - 8745293
Alignment:
Q  8 gtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagt 103  Q
    ||||| |||||||||||||||| |||| |||    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  8745104 gtgatctggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggatt 8745203  T
Q  104 cagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||  ||| |||| ||| |||| |||||||||| |||||||||    
T  8745204 cagttcgttggatcaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatcttt 8745293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 24324928 - 24324723
Alignment:
Q  8 gtgatttggtgtttctctggtgtaccgtgg----ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagt 103  Q
    |||||||||||||||| |||||||||| ||    |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  24324928 gtgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagt 24324829  T
Q  104 cagttctttggatcaag-tttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaaga 202  Q
    || |||||||| ||||| |||| |||||||||||||||||||||||| |||  ||| |||| |||  |||||||||||||||||||||||| ||||| ||    
T  24324828 caattctttggctcaagttttggttttgggctttttatggtttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttagga 24324729  T
Q  203 gttttt 208  Q
    | ||||    
T  24324728 gctttt 24324723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6716865 - 6716643
Alignment:
Q  9 tgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||| ||||||||||||||||||    || ||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||||||||    
T  6716865 tgatttgatgtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtc 6716766  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt-ggttaagag 203  Q
    |||||||||| ||||||||| | ||||| ||||||||||||||||||||  ||| || | ||| |||||||||||||||| ||||||||| || |||||     
T  6716765 agttctttggctcaagtttggtcttgggttttttatggtttctttcggtggatc-gaagtcgagaggtggtggaagctgattgatcttttcggataaga- 6716668  T
Q  204 ttttttcggaggtggctcaactttg 228  Q
    ||||| |||| |||||||| |||||    
T  6716667 tttttccggatgtggctcagctttg 6716643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 44755657 - 44755764
Alignment:
Q  121 tttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  44755657 tttgattttgggctttttatggtttctttcggtatatcagaggtcgataggtggtggaagctgaatgatcttttggataagagttttttcggaggtagct 44755756  T
Q  221 caactttg 228  Q
    ||||||||    
T  44755757 caactttg 44755764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 42533348 - 42533194
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| | |||||||  |||||||||||    
T  42533348 ggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtttg-gtttgggctttt 42533250  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||||||||||||||||  |||||||| ||  ||||||||| | ||||| |||||||    
T  42533249 tatggtttctttcggtggatcagaggtcgtgaggtggtggcaactgaacgatcttt 42533194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 1320748 - 1320969
Alignment:
Q  11 atttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 106  Q
    |||||||||||||||| |||| || |||    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||    
T  1320748 atttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcag 1320847  T
Q  107 ttctttggatcaag-tttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagtt 205  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||  ||| |||| ||| ||| ||||| | ||| ||||||  | || ||||| |     
T  1320848 ttctttggctcaagttttggttttgggctttttatggtttctttcggtggatcggaggtcgagagggggtggcaactgtatgatccctcggataaga-tc 1320946  T
Q  206 ttttcggaggtggctcaactttg 228  Q
    ||||| || ||||||||||||||    
T  1320947 ttttcagatgtggctcaactttg 1320969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 3478337 - 3478492
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||  |||||||||||     
T  3478337 ggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttttgggctttg 3478436  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    | |||| ||||||||||  ||| |||  ||| |||||| ||||||||||||||||||    
T  3478437 t-tggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatcttt 3478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44755571 - 44755663
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtgg---ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 90  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44755571 gtttgacgtgatttggtgtttctctggtgtaccgtggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 16954606 - 16954748
Alignment:
Q  10 gatttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    |||||||| ||||||||||||| |    ||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||  |||||    
T  16954606 gatttggtctttctctggtgtatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtca 16954705  T
Q  106 gttctttggatcaag-tttgattttgggctttttatggtttct 147  Q
    ||||||||  ||||| |||| ||||||||||||||||||||||    
T  16954706 gttctttgactcaagttttggttttgggctttttatggtttct 16954748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 6584894 - 6584993
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||||||||||||    
T  6584894 ggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggctttt 6584993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 16829064 - 16828924
Alignment:
Q  10 gatttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    |||||||||||||||| ||||| |    ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||  |||||    
T  16829064 gatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtca 16828965  T
Q  106 gttctttggatcaag-tttgattttgggctttttatggttt 145  Q
    ||||||||  ||||| |||| ||||||||||||||||||||    
T  16828964 gttctttgactcaagttttggttttgggctttttatggttt 16828924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38306205 - 38306344
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtgg----ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||| | ||    |||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||    
T  38306205 gtttgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagat 38306304  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
     ||||||||||||||||  ||||||| | |||||||||||    
T  38306305 tgggagtcagttctttgactcaagttggtttttgggcttt 38306344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 12480873 - 12480971
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    |||| ||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  12480873 ggtggccttctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttt 12480971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 10244135 - 10244265
Alignment:
Q  10 gatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    |||||||| |||||||||||||||| |||    ||||||||| || ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  10244135 gatttggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtca 10244234  T
Q  106 gttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||  ||||||| | |||||| ||||    
T  10244235 gttctttgactcaagttagtttttggccttt 10244265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 34389950 - 34390046
Alignment:
Q  41 gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||||||||||||    
T  34389950 gtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggctttt 34390046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3419793 - 3419654
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||| ||||| |||    |||||||||  | ||||||| ||||||| |||||||| ||||||||||||||||||||    
T  3419793 gtttgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagat 3419694  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||| ||||||  ||||||| | |||||||||||    
T  3419693 cgggagtcagctctttgactcaagttggtttttgggcttt 3419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 13311824 - 13311908
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtt 122  Q
    ||||||||| |||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13311824 ggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 3867060 - 3867200
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| |||| |||| |||||||||||||||| |||    ||||| ||| || ||||||| ||||| | |||||||| |||||||||||||||||||     
T  3867060 gtttgacttgatatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagac 3867159  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||||||  ||||||| | ||||||||||||    
T  3867160 cgggagtcagttctttgactcaagttggtttttgggctttt 3867200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 9349757 - 9349832
Alignment:
Q  61 taaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||||||||    
T  9349757 taaagtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 11379250 - 11379122
Alignment:
Q  15 ggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    ||||||||||||||| |||| |||    |||||||||||| |||||||| |  ||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  11379250 ggtgtttctctggtggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtact 11379151  T
Q  111 ttggatcaag-tttgattttgggcttttt 138  Q
    |||| ||||| |||| |||||||||||||    
T  11379150 ttggttcaagttttggttttgggcttttt 11379122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 41089885 - 41089745
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||||||||||| || |||    |||||| || || ||||||| |||||||||||||| ||||||||||||||||||||||    
T  41089885 gtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagat 41089786  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
     ||||||||| ||||||  ||||||| | ||||| ||||||    
T  41089785 tgggagtcagctctttgactcaagttggtttttgagctttt 41089745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 46133371 - 46133268
Alignment:
Q  41 gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagttt-gattttgggcttttta 139  Q
    |||||||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||||     
T  46133371 gtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggctttttt 46133272  T
Q  140 tggt 143  Q
    ||||    
T  46133271 tggt 46133268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 47326014 - 47325883
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||| |||||||||||||||| |||    ||||||| | || ||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||    
T  47326014 tgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtc 47325915  T
Q  105 agttctttggatcaagtttgattttgggcttt 136  Q
    || ||||||  ||||||| | |||||||||||    
T  47325914 agctctttgactcaagttggtttttgggcttt 47325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 33435062 - 33435178
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||| |||||||||||||||| |||    |||||||||  | ||||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  33435062 tgatttggt-tttctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtc 33435160  T
Q  105 agttctttggatcaagtt 122  Q
    |||||||||  |||||||    
T  33435161 agttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 38485541 - 38485640
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||| | | ||| || |||||| ||||||||||||    
T  38485541 ggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcag-tatctggttctagtttggttttgggctttt 38485639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 47457118 - 47457003
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| ||||||| |||||| ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||||| ||||||||  || ||||| |||    
T  47457118 ggggtgcccgtctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagtttagttatgggc-ttt 47457020  T
Q  138 tatggt-ttctttcggt 153  Q
    |||||| ||||||||||    
T  47457019 tatggtgttctttcggt 47457003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 35745923 - 35745824
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| || |||| || |||||||||| ||||| ||||||||||||||||||||||| |||||  ||||||| ||||||| | ||||||||||||    
T  35745923 ggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggctttt 35745824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 37794974 - 37795072
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||| || |||||||  || ||| |||||||||| ||| |||||||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  37794974 ggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggcttt 37795072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25160759 - 25160867
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| || |||||| |||||||||||||||| |||    ||||||||| || ||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  25160759 gtttgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagat 25160858  T
Q  97 cgggagtca 105  Q
    ||| |||||    
T  25160859 cggaagtca 25160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 5860384 - 5860286
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||| || ||||||| ||| |||| |||||||| ||| |||||||||||||||||||||||| |||||||   |||||| | |||||||||||    
T  5860384 ggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggcttt 5860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 23983187 - 23983280
Alignment:
Q  45 ccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    |||||| |||||||| | |||||||||||| |||||  ||||||||||||||||||||||| ||| || | ||||||||| ||||||| |||||    
T  23983187 ccttctaatttggtcttgaagtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttgggtttttt 23983280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 48058725 - 48058651
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||| |||||| |||||    
T  48058725 aagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggttttggcctttt 48058651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 9428186 - 9428105
Alignment:
Q  53 tttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    |||||||||  ||||||||| |||||||||||||||||||||||| | ||||||||||| || || |||||| | |||||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttcttcggttctagtttggtcttgggct 9428105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 36449069 - 36449224
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||||||||||||| || | |||||| ||||||  |||  |||| |||||||||  |||||||||||||||| |||||||   |||||| ||| |    
T  36449069 ggggtgcccttctgatttgatcttgaagtctagtgggcttatcgttttt-attcgagattaggagtcagttctttggttcaagttatgttttggacttat 36449167  T
Q  138 tatgg-tttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    | ||| |||||||||||  ||| ||||  || |||||||||||||  ||||||||||    
T  36449168 tttggttttctttcggtggatcggaggttgagaggtggtggaagcataatgatcttt 36449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 46262189 - 46262151
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 17802885 - 17802851
Alignment:
Q  65 gtctggtgggccgatcacttttgattcgagatcgg 99  Q
    |||||||||||||||||||||||||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcgg 17802851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 27993606 - 27993568
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 35206763 - 35206725
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  35206763 agtctggtgggccgatcacttttgatccgagatcgggag 35206725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 44353623 - 44353585
Alignment:
Q  75 ccgatcacttttgattcgagatcgggagtcagttctttg 113  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttg 44353585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 22568208 - 22568093
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    ||||||| |||||||||||||| |   || |||| || | ||| ||||||||||| |||||||||| |||| ||||| ||||| |||||||||||  |||    
T  22568208 ggggtgctcttctgatttggtcatgtggtttggtaggtcaatcgcttttgattcgtgatcgggagttagttttttggttcaagttttgattttggatttt 22568109  T
Q  137 ttatggtttctttcgg 152  Q
    ||| |  |||||||||    
T  22568108 ttaggtgttctttcgg 22568093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 25153231 - 25153265
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcg 98  Q
    |||||||||| ||||||||||||||||||||||||    
T  25153231 agtctggtggaccgatcacttttgattcgagatcg 25153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 20701940 - 20701710
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| ||||||||||| |||||||||||||||| |||    ||||||||||||||||||||| |  || |||||| |||||||||||||||||||||||    
T  20701940 gtttggcgtgatttggtttttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagat 20701841  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttgg 196  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||  ||| |||| ||| |||| |||||||||||||||||||| ||    
T  20701840 cgggagttagttctttggcttaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcgg 20701741  T
Q  197 ttaagagttttttcggaggtggctcaactttg 228  Q
     || |||  |||||| | ||||||||||||||    
T  20701740 ataggag-cttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 32935435 - 32935280
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  32935435 ggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttggactttt 32935336  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |  |  ||||||||||   ||| |||  |  ||||||||||||||| |||||||||    
T  32935335 ttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatcttt 32935280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 26534842 - 26534712
Alignment:
Q  13 ttggtgtttctctggtgtaccgtggggg--gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagt--- 107  Q
    ||||||||||||||||  |||| ||| |  ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||       
T  26534842 ttggtgtttctctggtagaccgcgggtgaggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttct 26534743  T
Q  108 tctttggatcaagtttgattttgggcttttt 138  Q
    ||||||| ||||||||| |||||||||||||    
T  26534742 tctttggttcaagtttggttttgggcttttt 26534712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 9224027 - 9224182
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    |||||||||| | | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||     
T  9224027 gggtgcccttttaagttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttcagttttggttttgggctttta 9224126  T
Q  139 atggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     ||||  |||||||||  | | ||||  |   ||||||||||||||||||||||||    
T  9224127 ttggtgctctttcggtgcaccggaggttgtgcggtggtggaagctgaatgatcttt 9224182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 26216112 - 26216015
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||| |||||||||||||    
T  26216112 ggtgcccttctgatttgattctaa-gtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggcttttt 26216015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 13423482 - 13423607
Alignment:
Q  69 ggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgat 168  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||| || |||||||| |||||||||||||| |  | | |||| ||      
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggctttatatggtttctttcgatggaccggaggccgcg 13423581  T
Q  169 aggtggtggaagctgaatgatctttt 194  Q
    |||||||||||||||| |||||||||    
T  13423582 aggtggtggaagctgattgatctttt 13423607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 3880712 - 3880505
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggggg----gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    |||||||||||||||||||| ||||| ||| |    |||||||||||||||||||||||||| |||||||||||||||||||||||||||              
T  3880712 tgatttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag---------- 3880623  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagt 204  Q
         ||||||||||||||| ||||| | ||||||||||||||||| ||  ||| |||| |||  ||||||||||| ||||| |||||| || || |||     
T  3880622 -----tttggatcaagtttggttttgagatttttatggtttctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagc 3880528  T
Q  205 tttttcggaggtggctcaactttg 228  Q
    ||||| ||| |||||||| |||||    
T  3880527 ttttt-ggatgtggctcagctttg 3880505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 21266100 - 21266196
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||    
T  21266100 ggtggccttatgatttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggcttt 21266196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 16510438 - 16510323
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| |||| |||| |||||||||||||||| |||    ||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||    
T  16510438 gtttgacttgatatggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagat 16510339  T
Q  97 cgggagtcagttcttt 112  Q
     | |||||||||||||    
T  16510338 tgagagtcagttcttt 16510323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 3117438 - 3117576
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    |||||| ||||||||| |||||||||||| ||| |||    ||||||||| || ||||| |  || ||| |||||||||||||||||||||||| |||||    
T  3117438 tttgacttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatc 3117537  T
Q  98 gggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||||||  ||||||| | |||||||||||    
T  3117538 gggagtcagttctttgactcaagttggtttttgggcttt 3117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 12794099 - 12794200
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatca-cttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||  |||||||  |||| ||||||    
T  12794099 ggggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttcttgggtccaagtttagtttttggcttt 12794198  T
Q  137 tt 138  Q
    ||    
T  12794199 tt 12794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 21264973 - 21265069
Alignment:
Q  40 ggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||| |||| |||||||||||| ||| || ||||||||||  |||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||    
T  21264973 ggtggccttatgatttggtcctgaagactagtgggccgatagcttttgattcgagatcgggagttagttatctggttcaagtttggttttgggcttt 21265069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 33968736 - 33968615
Alignment:
Q  15 ggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    ||||||||||||||| |||| |||    ||||| ||||||||||||||  |  ||||| |||||  |||| |||||||||||||||||||||||||||||    
T  33968736 ggtgtttctctggtgaaccgagggtatggggtggccttctgatttggttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagttct 33968637  T
Q  111 ttggatcaag-tttgattttgg 131  Q
    |||| ||||| |||||||||||    
T  33968636 ttggttcaagttttgattttgg 33968615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 15120624 - 15120537
Alignment:
Q  107 ttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||| ||||||||  |||||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||  |||||||||    
T  15120624 ttctttggctcaagtttagttttgggctttttatggtttcttttggtggatcggaggtcgagaggtggtggaagctggttgatctttt 15120537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 34105410 - 34105468
Alignment:
Q  50 tgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  34105410 tgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtt 34105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 34090374 - 34090418
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 15944020 - 15944116
Alignment:
Q  54 ttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttg-attttgggctttttatggtttcttt 149  Q
    |||||| | |||| ||||| ||||||||||||||||| ||| || ||||||||||| |||| ||||  |||  |||||||||||||| | |||||||    
T  15944020 ttggtcttgaagtttggtgagccgatcacttttgattagagttctggagtcagttccttggttcaatcttgttttttgggctttttaggttttcttt 15944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 34092806 - 34092866
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttg 124  Q
    ||||||||| ||||||||||||||||||||||| || ||||  |||||||  |||||||||    
T  34092806 agtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtttg 34092866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 7546499 - 7546464
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgg 99  Q
    |||||||||| |||||||||||||||||||||||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatcgg 7546464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 32316393 - 32316438
Alignment:
Q  78 atcacttttgattcgagatcgggagtcagttctttggatcaagttt 123  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||    
T  32316393 atcacttttgattcgagatcggtagtaagttctttgattcaagttt 32316438  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 12129228 - 12129264
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcggg 100  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  12129228 agtctgatggtccgatcacttttgattcgagatcggg 12129264  T

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Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7195375 - 7195178
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtacc---gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    ||||| |||||||| ||||||||||||||||||   ||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  7195375 gtttggcgtgatttagtgtttctctggtgtaccagggtgaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatc 7195276  T
Q  98 gggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttgg 196  Q
    ||||||||||||||||| ||||||| || ||||||| ||||||||||| |||||||  ||| |||| ||| |||| ||||||||||||| |||||||||    
T  7195275 gggagtcagttctttggctcaagttagagtttgggc-ttttatggtttttttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttgg 7195178  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 13954369 - 13954174
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    |||||| |||||| |||||||||||||||||||    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13954369 tttgacttgattttgtgtttctctggtgtaccgaaggtgaggggtgcc-ttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 13954271  T
Q  98 gggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||  ||| || |  || ||||||||||| |||| |||||||||    
T  13954270 gggagtcattactttggctcaagtttggttttgggctttttatggtttctttcggtggatcggaagttgaaaggtggtggaaactgattgatctttt 13954174  T

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Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 14302567 - 14302371
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||| |||||||||||||||||| || |||    || |||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||    
T  14302567 gtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagat 14302468  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||  ||| |||| ||| ||||||||||||||| |||||||||    
T  14302467 tgggagtcagttctttggagcaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatcttt 14302371  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 33259019 - 33258827
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| || |||||||||||||||||||||||||    || |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  33259019 gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagat 33258920  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgat 189  Q
    | ||||| |||||||||| || || |||  |||||||||||||||||||||||||||  ||| |||| ||| || | ||||||||||||||||    
T  33258919 caggagttagttctttggttcgaggttggatttgggctttttatggtttctttcggtggatcggaggtcgagagatagtggaagctgaatgat 33258827  T

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Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 8297420 - 8297608
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    ||||||||||||||||| |||||||| |||    |||||||||||||||||||| ||||||  ||||||||  || | ||||||||||||||||||||||    
T  8297420 tgatttggtgtttctctagtgtaccgagggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtc 8297519  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||||||  ||| |||| ||  |||||||||||| |||||| |||||    
T  8297520 agttctttggctcaagtttggttttggactttttatggtttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtcttt 8297608  T

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Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 7392160 - 7391979
Alignment:
Q  9 tgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 104  Q
    |||||||||||||||||| ||||||| |||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7392160 tgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtc 7392061  T
Q  105 agttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctt 192  Q
    ||||||||||  ||   ||| |||||||| |||||||||||||||||||  ||| |||| ||| ||||||| ||||| || |||||||    
T  7392060 agttctttgg--ca---ttggttttgggc-ttttatggtttctttcggtggatcggaggtcgagaggtggttgaagcggattgatctt 7391979  T

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Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 26046100 - 26045871
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccgtgg---ggggtgcccttctga-tttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    |||| |||||||||||||||||||||||||||| |    |||||||| || ||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  26046100 tttggcgtgatttggtgtttctctggtgtaccgggttaaggggtgcctttttgagtttggtcctaaagtctggtgaaccgatcacttttgattcgagatc 26046001  T
Q  98 gggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggt 197  Q
    |||||| |||  ||||| ||||||||| |||||| ||||||||||||||| ||||   ||| |||| || ||||  ||||||||||| ||||||||  |     
T  26046000 gggagttagtgttttggctcaagtttggttttggactttttatggtttctctcgggggatcggaggtcgttaggctgtggaagctgattgatctttcaga 26045901  T
Q  198 taagagttttttcggaggtggctcaactttg 228  Q
    || |||  |||||||||||| ||||||||||    
T  26045900 tatgag-cttttcggaggtgactcaactttg 26045871  T

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Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 34378042 - 34378181
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||  |||||||||||||||| |||    | ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  34378042 gtttgacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagat 34378141  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||   |||||| | |||||||||||    
T  34378142 cgggagtcagttctttgacacaagttggtttttgggcttt 34378181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 25991951 - 25992147
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    |||||||  |||||| ||||| ||||||||||||    || || ||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||    
T  25991951 gtttgacacgatttgatgtttttctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatcgcttttgattcgagat 25992050  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    || ||||||||||||| | || || ||| |||||||||||||||| ||||||||| |  ||| |||| ||  || || |||||||| ||||||||||    
T  25992051 cgagagtcagttctttagctcgaggttggttttgggctttttatgatttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatcttt 25992147  T

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Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 698305 - 698444
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||| |||    ||||||||| || ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  698305 gtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagat 698404  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||  ||||||  ||||||| | |||||||||||    
T  698405 cgggagtcaactctttgactcaagttggtttttgggcttt 698444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 21402903 - 21402777
Alignment:
Q  68 tggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacga 167  Q
    |||||||||||||||||||  |||||||||||||||||||||||||  ||| ||||| ||||| ||||||||||||||||||||||  ||  ||||  ||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactcaggtttggttttgagctttttatggtttctttcggtggattggaggttga 21402804  T
Q  168 taggtggtggaagctgaatgatctttt 194  Q
     |||||||||||| ||| |||||||||    
T  21402803 gaggtggtggaagttgattgatctttt 21402777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 24072388 - 24072278
Alignment:
Q  16 gtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| |||| |||    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||| |||||||||||    
T  24072388 gtgtttctctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctt 24072289  T
Q  112 tggatcaagtt 122  Q
    ||| |||||||    
T  24072288 tggttcaagtt 24072278  T

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Target: chr5; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 39184283 - 39184124
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag--tttgattttgggctt 135  Q
    ||||||||||||||||||| || |   ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  |||| ||||| ||||    
T  39184283 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagctt 39184184  T
Q  136 tttatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttg 195  Q
    ||| |||| ||||||||||  | ||||||  |  |||| ||||||||||| ||||||||||    
T  39184183 ttt-tggtgttctttcggtggaccagaggttgtgaggtagtggaagctgattgatcttttg 39184124  T

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Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 22675398 - 22675322
Alignment:
Q  60 ctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  22675398 ctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggcttt 22675322  T

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Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 27713058 - 27713153
Alignment:
Q  42 tgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| |||| || |||||| |||||| |||||||||||  ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  27713058 tgcccgtctggttgggtcctgaagtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggctttt 27713153  T

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Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18593187 - 18593325
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||||| |||||||| |||    || |||||| || ||||||| ||| ||| | |||||| ||||||||||||||||||||    
T  18593187 gtttgacttgatttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagat 18593286  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    ||||||| |||||||||  ||||||| | ||||||||||    
T  18593287 cgggagttagttctttgactcaagttggtttttgggctt 18593325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 39024545 - 39024452
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttggg 132  Q
    |||||||||||||| |||||||| |||| ||||||  | ||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  39024545 gggtgcccttctgagttggtcctgaagtttggtggctcaatcgcttttgattcgagatcgggagtcacttctttggttcaagtttggttttggg 39024452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 23426339 - 23426425
Alignment:
Q  48 tctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggct 134  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| | ||||| |||| |||||||||    
T  23426339 tctggtttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagttcttcgaatcaattttggttttgggct 23426425  T

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Target: chr5; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 31721662 - 31721756
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttggg 132  Q
    |||||||||||||||| |||| || ||||||  |||||||||| ||||||||||||||||||||||||||||| ||| |||  |||| |||||||    
T  31721662 ggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttctctggttcatttttggttttggg 31721756  T

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Target: chr5; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 8730902 - 8731003
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    ||||||||||| |||||||||| |  |||||||||| || ||| ||||| ||||||||||||||||||||||||||| ||| | |||| |||||||||||    
T  8730902 ggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttt 8731001  T
Q  137 tt 138  Q
    ||    
T  8731002 tt 8731003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 17854163 - 17854066
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    ||||||||||||| |||||||| | |||| ||||||||||| | ||||||| |||||||||||||||| || ||||| |||||||  | |||||||||    
T  17854163 ggggtgcccttctaatttggtcttgaagtatggtgggccgaccgcttttgactcgagatcgggagtcaattatttggttcaagttctactttgggctt 17854066  T

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Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 29087481 - 29087565
Alignment:
Q  53 tttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||| |||||||||||||| | |||| |||||||||||||||| ||||||||||||||| ||||| || | || |||||||||    
T  29087481 tttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggctttt 29087565  T

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Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 12046265 - 12046308
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggagtcag 106  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  12046265 aagtttggtgggccgatcacttttgattcgagatcgggactcag 12046308  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 25658217 - 25658132
Alignment:
Q  70 gtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggctttttatggt-ttctttcggt 153  Q
    ||||||||||| |||||||||| |||  |||||||||||||||   ||||| |||  ||||||||| |||||||| ||||||||||    
T  25658217 gtgggccgatcgcttttgattctagactgggagtcagttctttaattcaagtttttgttttgggctatttatggtgttctttcggt 25658132  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 25341709 - 25341741
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||||||||||||||||||||||| |||||    
T  25341709 agtctggtgggccgatcacttttgatttgagat 25341741  T

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Target: scaffold0119 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 42265 - 42078
Alignment:
Q  11 atttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 106  Q
    ||||| |||||||||||| ||||    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42265 atttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcag 42166  T
Q  107 ttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||| ||  ||| |||| ||| || ||||||||||||||| |||||||    
T  42165 ttctttggctcaagtttggttttgggatttttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatctttt 42078  T

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Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 1269437 - 1269624
Alignment:
Q  11 atttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 106  Q
    ||||| |||||||||||| ||||    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1269437 atttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcag 1269536  T
Q  107 ttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||| ||  ||| |||| ||| || ||||||||||||||| |||||||    
T  1269537 ttctttggctcaagtttggttttgggatttttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatctttt 1269624  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 37770769 - 37770583
Alignment:
Q  10 gatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    ||||| ||||||||||||||||||| |||    |||||||| |||||||||||||||| || ||||||||||||||||||||||||  |||| |||||||    
T  37770769 gatttagtgtttctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtca 37770670  T
Q  106 gttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     |||||| |||||| |||| |||||||| |||||||||||||||||||  ||| |||| ||| ||||| |||||||||||||||||||    
T  37770669 attctttagatcaattttggttttgggc-ttttatggtttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatcttt 37770583  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 13337224 - 13337414
Alignment:
Q  7 cgtgatttggtgtttctctggtgtacc---gtg-gggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||   ||| ||||||||||||||||||||  | ||||||||| ||||||||||||||||||||||| ||||| ||    
T  13337224 cgtgatttggtgtttctctggtgtaccagggtgagggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcggaag 13337323  T
Q  103 tcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||  ||  |||| ||| |||||||| |  |||||||||||||    
T  13337324 tcagttctttgactcaagttaggttttggactttttatggtttctttcggtggataggaggtcgagaggtggtgaacactgaatgatcttt 13337414  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 34230198 - 34230341
Alignment:
Q  50 tgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttcttt 149  Q
    ||||||| || |||||| || ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34230198 tgatttgatcgtaaagtttgatgggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggtttcttt 34230297  T
Q  150 cggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||||  ||| ||||  || |||||||||||||||||||||||||    
T  34230298 cggtggatcggaggttgagaggtggtggaagctgaatgatcttt 34230341  T

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Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 10173701 - 10173484
Alignment:
Q  15 ggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    |||||||||||||||||||    |||  |||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |    
T  10173701 ggtgtttctctggtgtaccagaggtgaagggtgctcttttgttttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttat 10173602  T
Q  111 ttggatcaagtttgattttgggctttttatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagtttttt 209  Q
    |||| ||||||||| ||||||||||||  |||| ||||||||||  ||| |||| ||| |||||||||||| ||||||||||||||  || |||  ||||    
T  10173601 ttggctcaagtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgag-ctttt 10173503  T
Q  210 cggaggtggctcaactttg 228  Q
    |||| |||||||| |||||    
T  10173502 cggatgtggctcagctttg 10173484  T

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Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 41086923 - 41086722
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg---gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    ||||| |||||||||||||| ||||||||||||  |||   ||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||    
T  41086923 gtttggcgtgatttggtgtt-ctctggtgtaccaggggtgagggtgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T
Q  98 gggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggt 197  Q
           || |||||||||  |||||| ||||||||||||||||||| ||||||||  ||| |||| ||| ||||||||||||||||||||||||| ||     
T  41086824 -------agctctttggat--agtttggttttgggctttttatggttcctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcgga 41086734  T
Q  198 taagagtttttt 209  Q
    |||||| |||||    
T  41086733 taagagcttttt 41086722  T

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Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 39339002 - 39338863
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| ||||| |||||||||| |||    ||||||||| || ||||||| ||| ||||||||||||||||| |||||||||||||||    
T  39339002 gtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagat 39338903  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  ||||||| | |||||||||||    
T  39338902 cgggagtcagttctttgactcaagttggtttttgggcttt 39338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 14106620 - 14106451
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||  |||| |||| || ||||    
T  14106620 ggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctctttagatcagttttggtttttgggtttt 14106521  T
Q  138 tatggtt----tctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagag 203  Q
    | |  ||    |||||||||  |||||||| ||| |||| ||||||| || |||||| || |||||||||    
T  14106520 tgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagag 14106451  T

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Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 14405195 - 14405282
Alignment:
Q  50 tgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||    
T  14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggctttt 14405282  T

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Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 22885214 - 22885076
Alignment:
Q  53 tttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggt-ttctttcg 151  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || || |||| ||||||||    
T  22885214 tttgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg-ttgttttggtgttctttcg 22885116  T
Q  152 gtatatcagaggacgataggtggtggaagctgaatgatct 191  Q
    ||  | ||||||  || |||||||||||| ||| ||||||    
T  22885115 gtggaccagaggttgagaggtggtggaagttgattgatct 22885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 7874277 - 7874375
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  ||||||| | ||||||||||||    
T  7874277 gggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggctttt 7874375  T

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Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 16959985 - 16960064
Alignment:
Q  56 ggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  16959985 ggtcctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggctt 16960064  T

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Target: chr2; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 4471883 - 4472006
Alignment:
Q  16 gtgtttctctggtgtaccgtggg---gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttcttt 112  Q
    |||||||||||||| |||| |||   ||| |||| |||| |||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4471883 gtgtttctctggtggaccgggggtaagggggcccgtctggtttggtcctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagttcttt 4471982  T
Q  113 ggatcaagtttgattttgggcttt 136  Q
    |  ||||||||| |||||||||||    
T  4471983 gattcaagtttgtttttgggcttt 4472006  T

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Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 16952479 - 16952289
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| ||||||||| ||| |||||||| ||| |  |||||||  |||||||||||||||||||| ||||||||||| ||||||||| |||||| | |||    
T  16952479 ggggttcccttctgaattgttcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt 16952380  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggctcaactttg 228  Q
    | |||| ||||||||||  ||| ||||  || |||||||||||||| || ||||||| || || |||  |||||||| |||| |||||||||    
T  16952379 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggag-cttttcggatgtggatcaactttg 16952289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 17023144 - 17022954
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| ||||||||| ||| |||||||| ||| |  |||||||  |||||||||||||||||||| ||||||||||| ||||||||| |||||| | |||    
T  17023144 ggggttcccttctgaattgttcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt 17023045  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggctcaactttg 228  Q
    | |||| ||||||||||  ||| ||||  || |||||||||||||| || ||||||| || || |||  |||||||| |||| |||||||||    
T  17023044 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggag-cttttcggatgtggatcaactttg 17022954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 17060450 - 17060260
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| ||||||||| ||| |||||||| ||| |  |||||||  |||||||||||||||||||| ||||||||||| ||||||||| |||||| | |||    
T  17060450 ggggttcccttctgaattgttcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt 17060351  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttggttaagagttttttcggaggtggctcaactttg 228  Q
    | |||| ||||||||||  ||| ||||  || |||||||||||||| || ||||||| || || |||  |||||||| |||| |||||||||    
T  17060350 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggag-cttttcggatgtggatcaactttg 17060260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 7695985 - 7696102
Alignment:
Q  75 ccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtgg 174  Q
    ||||||||||||||||||| | |||||||||||||||||| ||||||| | |||||||| ||||| |||||||||||||  |||  ||| ||  ||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggc-ttttacggtttctttcggtggatcgaaggtcgggaggtgg 7696083  T
Q  175 tggaagctgaatgatcttt 193  Q
    |||||||||||||||||||    
T  7696084 tggaagctgaatgatcttt 7696102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 15126488 - 15126391
Alignment:
Q  56 ggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggt-ttctttcggt 153  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||| |||||||| ||||||||| ||||||||||    
T  15126488 ggtcctgaagtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggc-ttttatggtgttctttcggt 15126391  T

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Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 193
Target Start/End: Original strand, 2062901 - 2063029
Alignment:
Q  65 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggt-ttctttcggtatatcagagg 163  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 2062999  T
Q  164 acgataggtggtggaagctgaatgatcttt 193  Q
      |  |||| |||||| |||| ||||||||    
T  2063000 ttgtgaggttgtggaaactgattgatcttt 2063029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 387158 - 387257
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| || ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||  ||||||| | ||||| ||||||    
T  387158 ggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttgagctttt 387257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 18681054 - 18681149
Alignment:
Q  42 tgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||||||  | |||| ||||||||||||  | ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  18681054 tgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagttctctggttcaagtttggttttgggctttt 18681149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 33788708 - 33788575
Alignment:
Q  58 tcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggt-ttctttcggtata 156  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||  |||||| || || |||| ||||||||||  |    
T  33788708 tcctgaagtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggtttggctttggg-ttgttttggtgttctttcggtgaa 33788610  T
Q  157 tcagaggacgataggtggtggaagctgaatgatct 191  Q
     ||||||  || |||||||||||||||| ||||||    
T  33788609 ccagaggttgagaggtggtggaagctgattgatct 33788575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 25505005 - 25504904
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    ||||||||||| |||||||||| |  |||||||||| || ||| ||||| ||||||||||||||||||||||||||| ||| | |||| |||||||||||    
T  25505005 ggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttt 25504906  T
Q  137 tt 138  Q
    ||    
T  25504905 tt 25504904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 31902510 - 31902413
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    |||||| |||||| ||||| | || |||||||||||||| ||| ||||| ||||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  31902510 ggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctggttcaagtttggttttgagctt 31902413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 17079154 - 17079270
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||| ||||||||| ||| |||||||| ||| |  |||||||  |||||||||||||||||||| ||||||||||| ||||||||| |||||| | |||    
T  17079154 ggggttcccttctgaattgttcctaaagactgctaagccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt 17079253  T
Q  138 tatggt-ttctttcggt 153  Q
    | |||| ||||||||||    
T  17079254 tttggtgttctttcggt 17079270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10524041 - 10524149
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggggg----gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||| ||| | ||| |    ||||||| |  ||||||| ||| |||||||||||||||||||||||||||||||||    
T  10524041 gtttgacttgatttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagat 10524140  T
Q  97 cgggagtca 105  Q
    |||||||||    
T  10524141 cgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 27739960 - 27740113
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| ||||  |||||||| |||||||||||||||||| |||||||||| |||||| ||||||||  || || ||||||||| | ||||| || |    
T  27739960 ggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttggg-ttgt 27740058  T
Q  138 tatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatct 191  Q
    | |||| ||||||||||  | ||||||  || ||||||||||| |||| ||||||    
T  27740059 tttggtgttctttcggtggaccagaggttgagaggtggtggaaactgattgatct 27740113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17105355 - 17105470
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtacc----gtggggggtgcccttctgatttggtcctaaagtctggtgggccgatcac-ttttgattcgaga 95  Q
    ||||||| | ||| ||||||||| |||||||||    ||| |||||||||| |||||||||| || ||||||| |||||||||||| |||||||||||||    
T  17105355 gtttgacttaattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgaga 17105454  T
Q  96 tcgggagtcagttctt 111  Q
    ||| || |||| ||||    
T  17105455 tcgagaatcagatctt 17105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 5254263 - 5254340
Alignment:
Q  60 ctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||| | ||||||| ||||||| | ||| ||||||||    
T  5254263 ctaaagtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggctttt 5254340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  52 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttcttt 112  Q
    ||||||| ||| |||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 4162090 - 4162052
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3745356 - 3745420
Alignment:
Q  75 ccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttttt 138  Q
    |||||| ||||| |||||||||||| |||||||||||||| | ||| |||| |||||||||||||    
T  3745356 ccgatcgcttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttt 3745420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 9560860 - 9560820
Alignment:
Q  62 aaagtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  9560860 aaagtttggtggaccgatcacttttgattcgagatcgggag 9560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 23665474 - 23665439
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgg 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23665474 agtctagtgggccgatcacttttgattcgagatcgg 23665439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 27880189 - 27880139
Alignment:
Q  74 gccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttg 124  Q
    |||||||  ||||||||||||||||| |||||||| ||||| |||||||||    
T  27880189 gccgatcgattttgattcgagatcggaagtcagttatttggttcaagtttg 27880139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 915523 - 915447
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgg-gcttttta 139  Q
    |||| |||||||| |||| |||||||||||||||||  |||||||| ||||  ||||||||| |||||| ||||||||    
T  915523 aagtatggtgggctgatcgcttttgattcgagatcgaaagtcagtt-tttgattcaagtttggttttggagcttttta 915447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 15710666 - 15710776
Alignment:
Q  16 gtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| ||||    || ||||||||||||||||| |  ||  | ||||||||  || |||||||||||||||||||||  | |||||||||    
T  15710666 gtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctt 15710765  T
Q  112 tggatcaagtt 122  Q
    | | |||||||    
T  15710766 tagttcaagtt 15710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 36276241 - 36276200
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtca 105  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  36276241 agtctggtgggctgttcgcttttgattcgagatcgggagtca 36276200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 34143123 - 34143079
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||| |||||||||||||| ||| ||||||| ||||||||    
T  34143123 agtctggtgagccgatcacttttgcttctagatcggaagtcagtt 34143079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 58071 - 58282
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggggg----gtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||||||||||||||||||||||||  ||| |    ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  58071 gtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagat 58170  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttgg 196  Q
    ||| ||||| || ||||||||||||||| |||| |||||||||||||||||||||||  ||| |||| ||| || || |||||||||||| |||||| ||    
T  58171 cggaagtcaattgtttggatcaagtttggttttaggctttttatggtttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcgg 58270  T
Q  197 ttaagagttttt 208  Q
     |||||| ||||    
T  58271 ataagagctttt 58282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 36651 - 36864
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| ||||||||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  36651 gtttggcgtgatttggtgtttctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagat 36750  T
Q  97 cgggagtcagttctttggatcaa--gtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||||||||||||  ||||   |||| |||||| ||||||||| |||||||||||  ||| |||| ||| | |||||||||| |||||| |||||     
T  36751 cgggagtcagttctttgtctcaactttttggttttggtctttttatgatttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttc 36850  T
Q  195 ggttaagagttttt 208  Q
    ||||| ||| ||||    
T  36851 ggttaggagctttt 36864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 14879421 - 14879576
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggctttt 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||| |||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttt 14879520  T
Q  138 tatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    ||||||||||||||||  ||  |||| ||| |||||||||||||| ||||||||||    
T  14879521 tatggtttctttcggtggataggaggtcgagaggtggtggaagcttaatgatcttt 14879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 37123326 - 37123521
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||||||||||||||||| |||||||  ||    |||||||||| || |||||||||||| | |||||||||||||||||||||||||||||    
T  37123326 gtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcgagat 37123425  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |   ||| |||  ||||||||||||||||||| |||||||||    
T  37123426 tgggagtcagttctttggatcaaatttggttttgggctttttatggtttctttc-gaggatcggagttcgataggtggtggaagctgtatgatcttt 37123521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25647628 - 25647854
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||| |||||||||||||||||||||||||||| | |    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  25647628 gtttggcgtgatttggtgtttctctggtgtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagat 25647727  T
Q  97 cgggagtcagttctttggatcaag--tttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||||||  ||||||||| | |||  |||| |||| ||||||||||||||||||| |||  ||| |||| ||| |||||||| ||| ||||||||||||     
T  25647728 cgggagttggttctttggcttaagtttttggttttaggctttttatggtttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttc 25647827  T
Q  195 ggttaagagttttttcggaggtggctca 222  Q
    ||||| |||  |||||||| ||||||||    
T  25647828 ggttatgag-cttttcggacgtggctca 25647854  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 14193889 - 14194041
Alignment:
Q  7 cgtgatttggtgt-ttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggga 101  Q
    ||||||||||||| |||| ||||||||||    || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  14193889 cgtgatttggtgtgttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattggga 14193988  T
Q  102 gtcagttctttggatcaag--tttgattttgggctttttatggtttctttcgg 152  Q
    ||| ||||||||| |||||  |||| |||||||||||||||||||||||||||    
T  14193989 gtcggttctttggctcaagtttttggttttgggctttttatggtttctttcgg 14194041  T

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Target: chr3; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 33144020 - 33143891
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggctttttatggtttctttcggtatatcaga 161  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||  ||||||    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctttttatggtttctttcggtggatcaga 33143921  T
Q  162 ggacgataggtggtggaagctgaatgatct 191  Q
    || ||  |||||||||||||||| ||||||    
T  33143920 ggtcgcgaggtggtggaagctgattgatct 33143891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 47945691 - 47945806
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||    
T  47945691 ggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggc-ttt 47945789  T
Q  138 tatggt-ttctttcggt 153  Q
    |||||| ||||||||||    
T  47945790 tatggtgttctttcggt 47945806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 14755389 - 14755205
Alignment:
Q  12 tttggtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 107  Q
    |||||||||||||||||||||||    || ||||||||||| |  ||| || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  14755389 tttggtgtttctctggtgtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagt 14755292  T
Q  108 tctttgg-atcaagtttgattttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
    |||||||  || || |||  |||||||||||||| |||||||||| |  ||| |||| ||| || ||||||||| ||||||||||||    
T  14755291 tctttggtttcgaggttggatttgggctttttattgtttctttcgatggatcggaggtcgagagatggtggaagttgaatgatcttt 14755205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 19176447 - 19176586
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg---gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 97  Q
    ||||||| | ||||||| |||||||| ||||||| | |   ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  19176447 gtttgacttaatttggtttttctctgatgtaccgggagtgagggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatc 19176546  T
Q  98 gggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||||||||||  ||||||| | ||||||||||||    
T  19176547 gggagtcagttctttgactcaagttggtttttgggctttt 19176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 1652975 - 1652882
Alignment:
Q  45 ccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  1652975 ccttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttttt 1652882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 823559 - 823374
Alignment:
Q  14 tggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttc 109  Q
    |||||||||||||||| ||||||||    |||||||||||  |||||||  | ||| ||  |||||||||||||||||||||||||||| |||||||||     
T  823559 tggtgtttctctggtggaccgtgggtaaagggtgcccttcaaatttggttatgaagactaatgggccgatcacttttgattcgagatcgagagtcagttg 823460  T
Q  110 tttggatcaagtttgattttgggctttttatggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatctttt 194  Q
    |||   ||||||||  |||||||||| || |||| ||||||||||| | ||||||  || |||||| |||||||||||||||||||    
T  823459 tttcattcaagttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatctttt 823374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 39021342 - 39021217
Alignment:
Q  68 tggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttttatggtttctttcggtatatcagaggacga 167  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||| | |||||| |||  ||| |||| |||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggc-ttttatagattcttttggtggatcggaggtcga 39021244  T
Q  168 taggtggtggaagctgaatgatctttt 194  Q
     || |||||| |||||| |||||||||    
T  39021243 gagatggtggtagctgattgatctttt 39021217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 5556555 - 5556655
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaag-tttgattttgggcttt 136  Q
    ||||||||||| |||||||||| |  ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  5556555 ggggtgcccttttgatttggtcttgtagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttt 5556654  T
Q  137 t 137  Q
    |    
T  5556655 t 5556655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 20611727 - 20611866
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| ||||||||| |||||||||||||||| |||    ||||||||| || |||| || ||| ||| || ||||||||||| ||||||||||||||    
T  20611727 gtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagat 20611826  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    |||||||||||||||||  | ||||| | |||||||||||    
T  20611827 cgggagtcagttctttgacttaagttggtttttgggcttt 20611866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 40023706 - 40023496
Alignment:
Q  2 tttgacgtgatttggtgtttctctggtgtaccgtggg---gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcg 98  Q
    |||||| |||| ||||||| |||| |||||||| |||   ||||||||| ||||||| ||  ||||||||||||| ||||||||||||||||||||||||    
T  40023706 tttgacttgatatggtgtt-ctctagtgtaccgggggcgagggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcg 40023608  T
Q  99 ggagtcagttctttggatcaagtttgattttgggcttt--ttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttttgg 196  Q
    ||||||  |||||||| | ||||| | |||||||||||  || ||   |||||||||  |||||||||||  |||| |||||||||| ||| || || ||    
T  40023607 ggagtcgattctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcgg 40023508  T
Q  197 ttaagagttttt 208  Q
    ||| ||| ||||    
T  40023507 ttaggagctttt 40023496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 43012374 - 43012459
Alignment:
Q  52 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| | ||||| ||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagctttt 43012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 17550968 - 17551040
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 17551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23328486 - 23328347
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| |||| ||||||| ||||||||||||| |||    |||||||||  ||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  23328486 gtttgacttgatatggtgtt-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagat 23328388  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||| || | ||||| ||||||| | ||||| ||||||    
T  23328387 cgggagttagctttttggctcaagttggtttttgagctttt 23328347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 27398944 - 27399099
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggcttttt 138  Q
    ||||||||||||  |||||||| ||||||||||||  | ||| |||| |||||||| || |||||||||| ||||| ||||||||| |||||||||||||    
T  27398944 gggtgcccttctattttggtccgaaagtctggtggcacaatcgctttagattcgaggtcaggagtcagttatttggttcaagtttggttttgggcttttt 27399043  T
Q  139 atggt-ttctttcggtatatcagaggacgataggtggtggaagctgaatgatcttt 193  Q
     |||| |||||| |||  | ||||||  || |||||||||  ||||||||||||||    
T  27399044 ttggtgttcttttggtggaccagaggttgagaggtggtggttgctgaatgatcttt 27399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 9584148 - 9584050
Alignment:
Q  39 gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    ||||||||| || ||||| | ||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||| | | ||||||||||||    
T  9584148 gggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggctttt 9584050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 30935512 - 30935386
Alignment:
Q  16 gtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| |||| |||    ||||||||||||||||||||  | |||| |||||||| |||| |||||||||| ||||||||||| |||| ||    
T  30935512 gtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgattcaagatcgggagttagttatt 30935413  T
Q  112 tggatcaagtttgattttgggcttttt 138  Q
    ||| ||||||||| ||||| |||||||    
T  30935412 tggttcaagtttggttttgagcttttt 30935386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34475891 - 34475783
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| || |||| | |||||||||||||||| |||    ||||||||| || ||||| | ||| |||||||||||||||||||||||||||||||||    
T  34475891 gtttgacttggtttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagat 34475792  T
Q  97 cgggagtca 105  Q
    |||||||||    
T  34475791 cgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 45398781 - 45398880
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||| |||||||||   ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||  | ||||| | ||||||||||||    
T  45398781 ggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggctttt 45398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2392643 - 2392504
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| || |||||| || ||||||||||||| |||    ||||||||| || ||||||| ||| || ||||||| ||||||||||||||||||||||    
T  2392643 gtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagat 2392544  T
Q  97 cgggagtcagttctttggatcaagtttgattttgggcttt 136  Q
     || |||||||||||||  | ||||| | |||||||||||    
T  2392543 tggaagtcagttctttgtcttaagttggtttttgggcttt 2392504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2394390 - 2394274
Alignment:
Q  1 gtttgacgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagat 96  Q
    ||||||| || |||||| || ||||||||||||| |||    ||||||||| || ||||||| ||| || ||||||| ||||||||||||||||||||||    
T  2394390 gtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagat 2394291  T
Q  97 cgggagtcagttctttg 113  Q
     || |||||||||||||    
T  2394290 tggaagtcagttctttg 2394274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 25594616 - 25594516
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctttt 137  Q
    |||||||||||||  ||||||||| ||||||||||||  |||| |||||||||| ||||||| ||| | |||||||| ||||| |||  |||||||||||    
T  25594616 ggggtgcccttctattttggtcctcaagtctggtgggtagatcgcttttgattctagatcggaagttaattctttggttcaagattggctttgggctttt 25594517  T
Q  138 t 138  Q
    |    
T  25594516 t 25594516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 20710779 - 20710740
Alignment:
Q  63 aagtctggtgggccgatcacttttgattcgagatcgggag 102  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20710779 aagtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 24099397 - 24099347
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgg 114  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  24099397 agtctggtgggccgatcacttttgattcgatatcgggaatcagttttttgg 24099347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 30127273 - 30127319
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttct 110  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  30127273 agtctggtgagccgatcgcttttgattcgagatcgggagtcagttct 30127319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 45163838 - 45163938
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtg--ggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttgattttgggctt 135  Q
    |||||||||| || ||||||| ||| ||||| |||  ||||||||||||||||||||||||| | |||||||| ||||  | ||||| | ||||||||||    
T  45163838 ggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttgggctt 45163937  T
Q  136 t 136  Q
    |    
T  45163938 t 45163938  T

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Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 31482869 - 31482932
Alignment:
Q  38 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggga 101  Q
    ||||| |||| || ||||||| ||| ||||||| |||| |||||||||||||||||||||||||    
T  31482869 ggggtaccctactaatttggttctatagtctggcgggcggatcacttttgattcgagatcggga 31482932  T

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Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 28937721 - 28937659
Alignment:
Q  127 tttgggctttttatggtttctttcggtatatcagaggacgataggtggtggaagctgaatgat 189  Q
    |||||||||||||||||||||||||||  ||| |||| | | || ||||||||||||||||||    
T  28937721 tttgggctttttatggtttctttcggtggatcggaggtcaagagatggtggaagctgaatgat 28937659  T

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Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 4464066 - 4463997
Alignment:
Q  7 cgtgatttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgg 73  Q
    |||||||||||||||||||| ||||||| |||    ||||||||||||||||||| | |||||||||||||    
T  4464066 cgtgatttggtgtttctctg-tgtaccgagggtgaggggtgcccttctgatttggccttaaagtctggtgg 4463997  T

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Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 31424247 - 31424296
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg 113  Q
    |||||||| ||||| || |||||||||||||||||||||||||| |||||    
T  31424247 agtctggtaggccggtcgcttttgattcgagatcgggagtcagtgctttg 31424296  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 2782139 - 2782090
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg 113  Q
    ||||||||||| |||||||||||||||  |||||||||| ||||| ||||    
T  2782139 agtctggtgggacgatcacttttgattttagatcgggagccagttttttg 2782090  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 19295935 - 19295891
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    ||||||||||||| |||||||||||||||| ||||| ||| ||||    
T  19295935 agtctggtgggcctatcacttttgattcgatatcggaagttagtt 19295891  T

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Target: scaffold1613 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1107 - 1028
Alignment:
Q  44 cccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagttt 123  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  1107 cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttt 1028  T

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Target: scaffold0068 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 35897 - 35770
Alignment:
Q  12 tttggtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 107  Q
    |||||| |||||||||||||||| |||    |||||||   || |||||||  || ||||| |||||||||||||||||||||||||||||||||||| |    
T  35897 tttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtca-t 35799  T
Q  108 tctttggatcaagtttgattttgggcttt 136  Q
    ||||||  | ||||| | |||||||||||    
T  35798 tctttgacttaagttggtttttgggcttt 35770  T

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Target: scaffold0620 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 3841 - 3885
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagtt 108  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggagtcagtt 3885  T

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Target: scaffold0620; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 8140 - 8200
Alignment:
Q  64 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttg 124  Q
    ||||||||| ||||||||||||||||||||||| || ||||  |||||||  |||||||||    
T  8140 agtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtttg 8200  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 47052 - 47162
Alignment:
Q  16 gtgtttctctggtgtaccgtggg----gggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| |||| |||    |||||||||||||||| |  ||| | ||||||||  || |||||||||||||||||||||  | |||||||||    
T  47052 gtgtttctctggtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgattcgagatcgtaaatcagttctt 47151  T
Q  112 tggatcaagtt 122  Q
    | | |||||||    
T  47152 tagttcaagtt 47162  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 59578 - 59688
Alignment:
Q  16 gtgtttctctggtgtaccg----tggggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 111  Q
    |||||||||||||| ||||    || ||||||||||||||||| |  ||  | ||||||||  || |||||||||||||||||||||  | |||||||||    
T  59578 gtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctt 59677  T
Q  112 tggatcaagtt 122  Q
    | | |||||||    
T  59678 tagttcaagtt 59688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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