View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_21 (Length: 422)
Name: NF6819A_low_21
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 31251750 - 31252154
Alignment:
| Q |
14 |
gaaacgggagatttcatattaaataatnnnnnnnnnnntattaaaccgactcttcc-tcnnnnnnntaacattaaacctgttattttacatactaagtca |
112 |
Q |
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| T |
31251750 |
gaaacgggagatttcatattaaataataaaaaaaaaaatattaaaccgactcttccctcaaaaaaataacattaaacctgttattttacatactaagtca |
31251849 |
T |
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| Q |
113 |
tnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttatta |
212 |
Q |
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| T |
31251850 |
taaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattctagatgtcattcatacacaaaagtggtgatttatta |
31251949 |
T |
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| Q |
213 |
ggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaa |
312 |
Q |
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| T |
31251950 |
ggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaa |
31252049 |
T |
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| Q |
313 |
tgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatg |
412 |
Q |
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| T |
31252050 |
tgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatg |
31252149 |
T |
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| Q |
413 |
gattt |
417 |
Q |
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| T |
31252150 |
gattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 128 - 417
Target Start/End: Complemental strand, 25815278 - 25814990
Alignment:
| Q |
128 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
227 |
Q |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
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| Q |
228 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
327 |
Q |
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| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
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| Q |
328 |
ttagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatggattt |
417 |
Q |
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| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaatgcaagagagatggattt |
25814990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 273 - 417
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
273 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
372 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
373 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
417 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
192 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
242 |
Q |
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| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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