View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_210 (Length: 229)
Name: NF6819A_low_210
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_210 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 45682053 - 45681878
Alignment:
| Q |
1 |
aatcccagctcagcattgataagacaaattaattataatataccgtacagcatattatacaagtgattttggattagatttgtctcaactattgtctgtc |
100 |
Q |
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| T |
45682053 |
aatcccagctcagcattgataagacaaattaattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaactattgtctgtc |
45681954 |
T |
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| Q |
101 |
tt-----gattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
171 |
Q |
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| T |
45681953 |
ttgatttgattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 45681824 - 45681795
Alignment:
| Q |
195 |
cagtccttcccatacatgcatgtttcttgt |
224 |
Q |
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| T |
45681824 |
cagtccttcccatacatgcatgtttcttgt |
45681795 |
T |
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