View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_212 (Length: 228)

Name: NF6819A_low_212
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6819A_low_212
NF6819A_low_212
[»] chr4 (12 HSPs)
chr4 (22-193)||(46550650-46550823)
chr4 (30-190)||(47541763-47541925)
chr4 (36-183)||(17056615-17056762)
chr4 (23-183)||(41464750-41464911)
chr4 (35-183)||(52920047-52920197)
chr4 (26-178)||(15827074-15827229)
chr4 (35-183)||(39503463-39503615)
chr4 (76-174)||(47833504-47833603)
chr4 (76-184)||(36364868-36364972)
chr4 (76-183)||(20679841-20679951)
chr4 (86-171)||(46381481-46381568)
chr4 (76-148)||(42969971-42970043)
[»] chr1 (13 HSPs)
chr1 (22-183)||(24241478-24241640)
chr1 (22-183)||(41942781-41942942)
chr1 (30-183)||(16253029-16253184)
chr1 (23-183)||(34773366-34773528)
chr1 (76-183)||(21356794-21356901)
chr1 (30-183)||(39744121-39744276)
chr1 (85-189)||(38746028-38746133)
chr1 (76-183)||(2344969-2345077)
chr1 (22-141)||(8971471-8971591)
chr1 (105-183)||(48503922-48504000)
chr1 (81-183)||(7101359-7101464)
chr1 (31-101)||(48506762-48506832)
chr1 (22-62)||(8971441-8971481)
[»] chr8 (12 HSPs)
chr8 (22-195)||(30208187-30208361)
chr8 (22-188)||(5594779-5594945)
chr8 (25-182)||(1162066-1162222)
chr8 (24-188)||(35179155-35179320)
chr8 (76-187)||(42056676-42056787)
chr8 (27-183)||(40719844-40720005)
chr8 (30-187)||(39401981-39402140)
chr8 (30-186)||(31333116-31333273)
chr8 (22-165)||(42921385-42921527)
chr8 (29-183)||(36132676-36132829)
chr8 (76-139)||(30362018-30362082)
chr8 (22-68)||(34514561-34514607)
[»] chr7 (10 HSPs)
chr7 (30-183)||(34998528-34998683)
chr7 (25-187)||(8541427-8541588)
chr7 (22-183)||(30783430-30783588)
chr7 (22-183)||(45627358-45627524)
chr7 (76-183)||(10544991-10545100)
chr7 (104-183)||(39187986-39188065)
chr7 (31-135)||(40076647-40076753)
chr7 (126-178)||(32676800-32676852)
chr7 (137-193)||(15878797-15878853)
chr7 (22-100)||(15878696-15878774)
[»] chr2 (12 HSPs)
chr2 (22-183)||(36400857-36401018)
chr2 (22-183)||(3870024-3870190)
chr2 (31-183)||(37721449-37721602)
chr2 (27-183)||(38879517-38879672)
chr2 (76-183)||(11028779-11028887)
chr2 (76-189)||(28734070-28734183)
chr2 (76-183)||(3647418-3647526)
chr2 (46-183)||(6512049-6512191)
chr2 (76-182)||(30706149-30706258)
chr2 (31-137)||(3949273-3949378)
chr2 (22-62)||(29685524-29685564)
chr2 (22-60)||(34480073-34480111)
[»] chr3 (12 HSPs)
chr3 (22-188)||(22831120-22831286)
chr3 (22-182)||(2008400-2008562)
chr3 (76-183)||(44880254-44880361)
chr3 (22-183)||(22220210-22220371)
chr3 (76-187)||(1994850-1994961)
chr3 (76-183)||(39056875-39056981)
chr3 (43-183)||(26466296-26466438)
chr3 (28-163)||(28297695-28297832)
chr3 (22-183)||(45805473-45805640)
chr3 (22-54)||(25199073-25199105)
chr3 (22-68)||(26466185-26466231)
chr3 (27-101)||(47169336-47169408)
[»] chr5 (14 HSPs)
chr5 (76-183)||(33758794-33758901)
chr5 (82-164)||(23151436-23151518)
chr5 (25-163)||(37872150-37872291)
chr5 (30-183)||(20524557-20524711)
chr5 (22-183)||(10719746-10719909)
chr5 (76-188)||(2976446-2976556)
chr5 (22-174)||(34849451-34849604)
chr5 (76-173)||(30319817-30319915)
chr5 (28-134)||(42285218-42285325)
chr5 (146-186)||(37872302-37872342)
chr5 (78-190)||(8026460-8026577)
chr5 (76-175)||(3454259-3454358)
chr5 (22-188)||(16778130-16778299)
chr5 (22-62)||(16778149-16778189)
[»] scaffold0095 (1 HSPs)
scaffold0095 (30-187)||(35362-35521)
[»] chr6 (5 HSPs)
chr6 (22-188)||(7080148-7080316)
chr6 (76-183)||(2141240-2141348)
chr6 (89-183)||(25336928-25337023)
chr6 (22-68)||(994864-994910)
chr6 (35-68)||(26606207-26606240)
[»] scaffold0288 (2 HSPs)
scaffold0288 (104-183)||(18084-18163)
scaffold0288 (26-68)||(17999-18042)
[»] scaffold0009 (1 HSPs)
scaffold0009 (104-191)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (76-183)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 46550650 - 46550823
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn--aataataaagaggaaattgataaaaatgatgattgaatatttag 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||||||||||||||||||||||||||||    
T  46550650 cacaagaccaaagaaaaagtgtttggtcacacacacataaagaagtatttttttttaataataaagagaaaattgataaaaatgatgattgaatatttag 46550749  T
Q  120 aggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 193  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| || |||||    
T  46550750 aggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatggaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 47541763 - 47541925
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatct 129  Q
    ||||||||||||||||||||||||||||||||| || ||       ||||||||  |||||||||||||||| ||||||||||||||| ||||| |||||    
T  47541763 caaagaaaaagtgtttggtcacacacacataaaaaaatatttttttaataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatct 47541862  T
Q  130 tttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctt 190  Q
    |||||  ||||||| | |||| |||||||||||| |||||||| |||| ||||||||||||||    
T  47541863 ttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 17056762 - 17056615
Alignment:
Q  36 aaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-ta 134  Q
    ||||||||||||||| |||||||||||||| ||       ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| ||    
T  17056762 aaaagtgtttggtcatacacacataaagaaatatttttttaataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttata 17056664  T
Q  135 tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17056663 tgtgtgtattcaaacactattgatttggtcttgtgaccatggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 41464750 - 41464911
Alignment:
Q  23 acaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagagg 122  Q
    ||||||| ||||||| |||||||||||||||||||||  |||| ||       ||||||||||| |||||||||||||| ||||||||| ||||| || |    
T  41464750 acaggactaaagaaatagtgtttggtcacacacacatggagaaatatttttt-aataataaagaagaaattgataaaaaagatgattgagtattttgaag 41464848  T
Q  123 agaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||||||||  || ||  |||||||||||| ||||||||||||| |||||||    
T  41464849 agaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgaccatgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 52920047 - 52920197
Alignment:
Q  35 aaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttt 133  Q
    ||||||||||| |||||||| |||||||||||||       |||||||||||| |||||||| |||||  ||||||||||||||  | |  |||||||||    
T  52920047 aaaaagtgtttagtcacacatacataaagaagtatttttt-aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatcttttt 52920145  T
Q  134 a--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |  | | |||||| ||||||||||||||||||||||||||||||||||||||    
T  52920146 atttatatgtatttaaacattattgatttggtcttgtgaccatggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 15827074 - 15827229
Alignment:
Q  26 ggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgat-aaaaatgatgattgaatatttagaggag 124  Q
    |||| ||||||| |||||||||||| |||||||| ||||||||        || |  ||||| |||||||| |||||  || ||||||||||| ||  ||    
T  15827074 ggactaaagaaatagtgtttggtcatacacacattaagaagtattttttttattaataagagaaaattgatgaaaaaaaataattgaatattttgacaag 15827173  T
Q  125 aatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 178  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827174 aatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 39503463 - 39503615
Alignment:
Q  35 aaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgat--aaaaatgatgattgaatatttagaggagaatctttt 132  Q
    |||||||||||| |||||||||||||||||| ||       |||||||||||||||||||||  |||||  |  ||| |||||||  | ||  |||||||    
T  39503463 aaaaagtgtttgatcacacacacataaagaaatatttttttaataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttt 39503562  T
Q  133 tatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||  ||| |||||||| ||||||||| ||||||||||||| ||||||||    
T  39503563 tatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  176 gaagaatat 184  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 172  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  173 atggaagaata 183  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  86 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 171  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 148  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 24241640 - 24241478
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn-aataataaagaggaaattgataaaaatgatgattgaatatttaga 120  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||        |||||||| ||||||||||||||||| ||||||||||||||| ||    
T  24241640 cacaggaccaaagaaaaagtatttggtcacacacacataaaaaagtattttttttaataataaggaggaaattgataaaaaagatgattgaatattttga 24241541  T
Q  121 ggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  24241540 ggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatggaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 41942942 - 41942781
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||| ||     
T  41942942 cacacgaccaaagataaagtgtttggtcatacacacataaagaagtatttttttaataataaggaggaaattgataaaaatgatgattgaatatttcgaa 41942843  T
Q  122 gagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||    
T  41942842 gagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatgaaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 16253184 - 16253029
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaag--tannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaat 127  Q
    ||||||||||||||||||||||||||||||||| ||   ||       |||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  16253184 caaagaaaaagtgtttggtcacacacacataaaaaaaaatatttttttaataataaggaggaaattgataaaaaagatgattgaatattttgaggagaat 16253085  T
Q  128 ctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  16253084 ctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatggaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 34773366 - 34773528
Alignment:
Q  23 acaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn-aataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||         ||||||||| |||||||| |||||||  |||||||||||||| |||    
T  34773366 acaggaccaaagaaaaagtgtttgatcacacatacaaaaagaagtgttttttttaataataaa-aggaaattaataaaaaatatgattgaatattttgag 34773464  T
Q  122 gagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||||||||||  | ||||||||||||| |||||||||||| ||||||||||||    
T  34773465 gagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  176 gaagaata 183  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 39744121 - 39744276
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataa--agaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaat 127  Q
    |||||||| |||||||||||||||||||| ||  |||||||       |||||||| ||||||| |||||||||  |||||||| ||||  ||| |||||    
T  39744121 caaagaaatagtgtttggtcacacacacacaagaagaagtacttttttaataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaat 39744220  T
Q  128 ctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||    
T  39744221 ctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatagaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  85 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  184 tctcct 189  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  174 tggaagaata 183  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 8971591 - 8971471
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga-tgattgaatatttaga 120  Q
    |||||||||||| |||||||||| ||||| ||| ||||||| |||||       |||||||| |||||| ||||||||||  | ||||| ||||||| ||    
T  8971591 cacaggaccaaaaaaaaagtgttcggtcatacatacataaataagtatttttttaataataaggaggaacttgataaaaaaaattgattaaatattttga 8971492  T
Q  121 ggagaatctttttatgtgtgt 141  Q
    ||||||| ||||||| |||||    
T  8971491 ggagaatatttttatatgtgt 8971471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  105 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  81 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 176  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  177 aagaata 183  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 48506832 - 48506762
Alignment:
Q  31 aaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaa 101  Q
    ||||||| |||||||| ||||||||| |||||||||||       |||||||| ||||||| |||||||||    
T  48506832 aaagaaatagtgtttgatcacacacatataaagaagtatttttttaataataaggaggaaaatgataaaaa 48506762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 8971441 - 8971481
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaa 62  Q
    |||| ||||||||||||||| |||||||||||||| |||||    
T  8971441 cacacgaccaaagaaaaagtatttggtcacacacatataaa 8971481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 30208361 - 30208187
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||||||| |||    
T  30208361 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtgtttttttaataataaggaggaaattgataaaaaagatgattgaatattt-gag 30208263  T
Q  122 gagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttattct 195  Q
    |||||||||||||||| |  || | |||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  30208262 gagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 5594945 - 5594779
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||       |||||||| ||||||| ||||||||| ||||||||||||||| |||    
T  5594945 cacaggatcaaagaaaaagtgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaatattttgag 5594846  T
Q  122 gagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcc 188  Q
     ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||  |||||||||||||    
T  5594845 aagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagagaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 1162066 - 1162222
Alignment:
Q  25 aggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggag 124  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||| || ||  ||||||||||| ||||||    
T  1162066 aggactaaagaaaaagtgtttggtcacacacacataaagaaatatttttttaataataaagaggaaattgataagaaagac-attgaatattttgaggag 1162164  T
Q  125 aatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 182  Q
    |||| |||||||||||| |||||| |||| |||||||||||||||| |||||| ||||    
T  1162165 aatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatggacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 35179320 - 35179155
Alignment:
Q  24 caggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga-tgattgaatatttagagg 122  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||       ||||||||  ||||||||||||||||  | | ||||||||||| |||     
T  35179320 caggatcaaagaaaaagtgtttggtcacacacgcataaagaagtatttttttaataataagaaggaaattgataaaaaaaaattattgaatattttgaga 35179221  T
Q  123 agaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcc 188  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| |||||||| ||||||| ||||    
T  35179220 agaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccatgaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  176 gaagaatatctc 187  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 40719844 - 40720005
Alignment:
Q  27 gaccaaagaaaaagtgtttggtcaca--cacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttagagga 123  Q
    ||||||||||||||||||||||||||  ||||||||||||||||       |||||||| |||||||||||||||||  ||||||||||||||| |||||    
T  40719844 gaccaaagaaaaagtgtttggtcacatacacacataaagaagtattttttaaataataaggaggaaattgataaaaaaagatgattgaatattttgagga 40719943  T
Q  124 gaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||  ||||||| | ||||||||||| ||||  |||| ||||||||||||||||    
T  40719944 gaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccatggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 39401981 - 39402140
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatc 128  Q
    |||||||||||||||||||||||| || | ||| || ||       ||||||||  | ||||||||||||||  ||||||||||||||| ||||||||||    
T  39401981 caaagaaaaagtgtttggtcacacgcataaaaaaaa-tatttttttaataataagaaagaaattgataaaaaaagatgattgaatattttgaggagaatc 39402079  T
Q  129 tttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatatctc 187  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  39402080 tttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatatctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 31333116 - 31333273
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatct 129  Q
    |||||||| ||||||||||||||||||||||||||| ||       |||||||| ||| ||| ||||||||| |||||||||||||||  || | |||||    
T  31333116 caaagaaatagtgtttggtcacacacacataaagaaatatttttttaataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatct 31333215  T
Q  130 tttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatct 186  Q
    |||||  ||||||||  |||||||| |||||||||||||||||| ||||||||||||||    
T  31333216 ttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgactatggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 42921527 - 42921385
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn-aataataaagaggaaattgataaaaatgatgattgaatatttaga 120  Q
    ||||||| ||||||||||||||||| |||||||||  |||||||||         |||||||| || |||||||||||||| ||||||||| ||||| ||    
T  42921527 cacaggatcaaagaaaaagtgtttgatcacacaca--taaagaagtgttttttttaataataaggatgaaattgataaaaaagatgattgattattttga 42921430  T
Q  121 ggagaatctttttatgtgtgtattcaaacattattgatttggtct 165  Q
    | ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921429 gaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 36132829 - 36132676
Alignment:
Q  29 ccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatc 128  Q
    ||||| |||||||||||||| | |||||||||||||| ||       |||||||| ||||||||| |||||||  |||||| |||||||  |  |  |||    
T  36132829 ccaaataaaaagtgtttggttatacacacataaagaaatatttttttaataataa-gaggaaattaataaaaaaaatgattaaatattttaaaaaccatc 36132731  T
Q  129 tttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||| |||| | |||| |||| |||||||||| || ||||||||    
T  36132730 tttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaata 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  76 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 139  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 34514607 - 34514561
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagta 68  Q
    |||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  34514607 cacaagaccaaacaaatagtgtttggtcacacacacataaaaaagta 34514561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 34998683 - 34998528
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatct 129  Q
    |||||||||||| ||||||||||||||||||||||| ||       |||||||| ||| |||||||||||||| |||||||||||||| |||||||||||    
T  34998683 caaagaaaaagtatttggtcacacacacataaagaaatatttttttaataataaggagaaaattgataaaaataatgattgaatattttgaggagaatct 34998584  T
Q  130 ttt--tatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||  ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  34998583 ttttatatgtgtgtgtccaaacattattgatttggtcttgtgaccatggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 8541588 - 8541427
Alignment:
Q  25 aggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaa-tgatgattgaatatttagagga 123  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||       |||||||| ||||||||||||||||| | |||||||||||||| |||||    
T  8541588 aggatcaaagaaatagtgtttggtcacacaca--taaagaagtatttttttaataataaggaggaaattgataaaaaataatgattgaatattttgagga 8541491  T
Q  124 gaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctc 187  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  8541490 gaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccataaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 30783430 - 30783588
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||       ||||| ||||||||||||||||||||  || ||| |||||||  ||    
T  30783430 cacatgaccaaataaaaagtgtttggtcacacacacataaagaaatatttttttaataagaaagaggaaattgataaaaaa-ataattaaatattttaag 30783528  T
Q  122 gagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
     |  |||||||||||||||  | |||||| |||| |||| ||||| ||||||| ||||||||    
T  30783529 aaccatctttttatgtgtg--tccaaacactattaatttagtcttctgaccatagaagaata 30783588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 45627358 - 45627524
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn--aataataaagaggaaattgataaaaatgatgattgaatatttag 119  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||| ||         ||||||| | ||||||||||||||||  |||||| |||||||      
T  45627358 cacatgaccaaataaaaactgtttggtcacacacacataaagaaatatttttttttaataatataaaggaaattgataaaaaaaatgattaaatatttta 45627457  T
Q  120 aggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgaccatggaagaata 183  Q
    |||| ||| ||||| |||||||| | ||||| || ||||||||||||| ||||||||||||||||||    
T  45627458 aggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgaccatggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  76 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 40076647 - 40076753
Alignment:
Q  31 aaagaaaaagtgtttggtcacacacacat-aaagaagtannnnnnnaataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatc 128  Q
    ||||||||||||||||||||||||||||| ||| || ||       |||||||| |||||||||||| ||||| |||||||||||||||  |  ||||||    
T  40076647 aaagaaaaagtgtttggtcacacacacataaaaaaaatatttttttaataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatc 40076746  T
Q  129 tttttat 135  Q
    |||||||    
T  40076747 tttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  126 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 178  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  137 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 193  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 15878696 - 15878774
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaa 100  Q
    |||| ||||||| |||||||||||||||||||||| || ||||| ||       |||||||||||  ||||||||||||    
T  15878696 cacatgaccaaataaaaagtgtttggtcacacacaaatcaagaaatatttttttaataataaagactaaattgataaaa 15878774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 36401018 - 36400857
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||       ||||||| |||   |||||||||||| ||||||||||||||| |||    
T  36401018 cacaggactaaagaaaaagtgtttggacacacacacataaagaagtatttttttaataatagagac--aattgataaaaaagatgattgaatattttgag 36400921  T
Q  122 gagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400920 gagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 3870190 - 3870024
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn---aataataaagaggaaattgataaaaatgatgattgaatattta 118  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||          |||||||| ||||||||||||||||| |||||||||||||||     
T  3870190 cacaggaccaaagaaaaagtgtttggtcacacaca--taaagaagtattttttttttaataataaggaggaaattgataaaaaagatgattgaatatttt 3870093  T
Q  119 gaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  3870092 gaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgaccatggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 37721602 - 37721449
Alignment:
Q  31 aaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatct 129  Q
    ||||||||||||||||||||||||||||||||||| ||       |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||    
T  37721602 aaagaaaaagtgtttggtcacacacacataaagaattatttttttaataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatct 37721503  T
Q  130 ttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||| | || | |||| ||||||||||||||||||||||||||||||||||    
T  37721502 ttttatgcgcgtgtccaaatattattgatttggtcttgtgaccatggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 38879672 - 38879517
Alignment:
Q  27 gaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttagaggaga 125  Q
    ||||||||||||| |||||||||| |||||  ||||||||||       |||||| | ||| |||||||||||||  ||||||| ||||||| |||||||    
T  38879672 gaccaaagaaaaaatgtttggtcatacaca--taaagaagtatttttttaataatgaggagaaaattgataaaaaaagatgatttaatattttgaggaga 38879575  T
Q  126 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||    
T  38879574 atctttttatgtgtgtgtccaaacattattaatttggtcttgtgactatggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  175 ggaagaatatctcct 189  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  174 tggaagaata 183  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 6512049 - 6512191
Alignment:
Q  46 ggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgt 141  Q
    |||||||||||||||||||| ||       ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | |||||||||||||||    
T  6512049 ggtcacacacacataaagaaatatttttttaataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgt 6512147  T
Q  142 att--caaacattattgatttggtcttgtgaccatggaagaata 183  Q
     |   |||||| ||||||||||||||||||||||||||| ||||    
T  6512148 gtgtccaaacactattgatttggtcttgtgaccatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 170  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  171 ccatggaagaat 182  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 3949273 - 3949378
Alignment:
Q  31 aaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctt 130  Q
    ||||||||| |||||||||||||| |||||||||  ||       ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  ||    
T  3949273 aaagaaaaaatgtttggtcacacatacataaagagatatttttt-aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattt 3949371  T
Q  131 tttatgt 137  Q
    |||||||    
T  3949372 tttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 29685564 - 29685524
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaa 62  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  29685564 cacatgaccaaagaaaaagtgtttggtcacacacacataaa 29685524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 34480073 - 34480111
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacata 60  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  34480073 cacaggaccaaagaaaaagtgtttggtcacaaacacata 34480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 22831120 - 22831286
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||       |||||||| ||||||| ||||||||| ||||||||||||||| |||    
T  22831120 cacaggatcaaagaaaaagtgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaatattttgag 22831219  T
Q  122 gagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcc 188  Q
     ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||  |||||||||||||    
T  22831220 aagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagagaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 2008562 - 2008400
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||||||||||||||| ||||||||| ||||||||||||||  ||||       |||||||| ||| ||||||||||||| ||||||||||||||| |||    
T  2008562 cacaggaccaaagaaatagtgtttggccacacacacataaattagtatttttttaataataaggagaaaattgataaaaaagatgattgaatattttgag 2008463  T
Q  122 gagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 182  Q
    |||||||||||  ||||||||| | |||| ||||||||||||||||||||| |||||||||||    
T  2008462 gagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatcatggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  176 gaagaata 183  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 22220371 - 22220210
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttaga 120  Q
    |||||||||||||||||||| ||||| ||||||||||| || || |        |||||||| |||||||||||||||||  ||||||||||||||| ||    
T  22220371 cacaggaccaaagaaaaagtatttggacacacacacatgaaaaa-tctttttttaataataaggaggaaattgataaaaaaagatgattgaatattttga 22220273  T
Q  121 ggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    | ||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||    
T  22220272 gaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccatggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  176 gaagaatatctc 187  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  176 gaagaata 183  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 26466296 - 26466438
Alignment:
Q  43 tttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgt 139  Q
    ||||||||||||||||||||||||||       |||||||| ||| |||||||||   ||||  |  |||||||||||  |  ||||||||||||| | |    
T  26466296 tttggtcacacacacataaagaagtatttttt-aataataaggagaaaattgatataaaaaaaaacaattgaatattttaaaaagaatctttttatatat 26466394  T
Q  140 gtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    || ||||||||||||| ||||| |||||||||||||||||||||    
T  26466395 gtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 28297832 - 28297695
Alignment:
Q  28 accaaagaaaaagtgtttggtcacacacacataaa--gaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagaggaga 125  Q
    ||||||||||||||||||||||||| | |||||||  ||| ||       |||||||||||||||||||||||||   ||||| |||||| |  ||||||    
T  28297832 accaaagaaaaagtgtttggtcacagatacataaaaagaaatatttttttaataataaagaggaaattgataaaagaaatgatcgaatatgttaaggaga 28297733  T
Q  126 atctttttatgtgtgtattcaaacattattgatttggt 163  Q
    |||||||||| | | | | ||||| |||||||||||||    
T  28297732 atctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 45805473 - 45805640
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaa------aatgatgattgaatat 115  Q
    |||| ||||||| |||||||||||||||||| ||||||||| || |         |||||||||||||||||||||||      ||  || ||| |||||    
T  45805473 cacatgaccaaataaaaagtgtttggtcacatacacataaacaaatgttttttttataataaagaggaaattgataaataaataaaaaataattaaatat 45805572  T
Q  116 ttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||  | ||  |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805573 tttaaagaccatctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 25199105 - 25199073
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacaca 54  Q
    |||||||||||||||||||||||||||||||||    
T  25199105 cacaggaccaaagaaaaagtgtttggtcacaca 25199073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 26466185 - 26466231
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagta 68  Q
    |||||||  ||| |||||||||||||||||||||||||||| |||||    
T  26466185 cacaggagaaaaaaaaaagtgtttggtcacacacacataaaaaagta 26466231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 47169408 - 47169336
Alignment:
Q  27 gaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaa 101  Q
    ||||||| ||||||||||| ||||||||||  ||||||| ||       ||||||||||||||||||||||||||    
T  47169408 gaccaaataaaaagtgtttagtcacacaca--taaagaaataattttttaataataaagaggaaattgataaaaa 47169336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  176 gaagaata 183  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  82 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 164  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 37872150 - 37872291
Alignment:
Q  25 aggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttagagga 123  Q
    ||||||||||||||||| |||||||||||||||||||| || ||       |||||||| |||||||||||||||||  ||||||||||||||| || ||    
T  37872150 aggaccaaagaaaaagtatttggtcacacacacataaaaaaatatatttttaataataaggaggaaattgataaaaaaagatgattgaatattttgatga 37872249  T
Q  124 gaatcttttta--tgtgtgtattcaaacattattgatttggt 163  Q
    |||||||||||  ||||||| | |||| ||||||||||||||    
T  37872250 gaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 20524557 - 20524711
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn-aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatc 128  Q
    |||| ||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||  ||||||||||||||  |  |  |||    
T  20524557 caaataaaaagtgtttggtcacacacacataaagaaatattttttttaataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatc 20524656  T
Q  129 tttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||| |||||||| | |||||| ||||||||| || |||||| ||||||||||||    
T  20524657 ttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatggaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 10719909 - 10719746
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn-aataataaagaggaaattgataaaaatga-tgattgaatatttag 119  Q
    |||| ||||||| |||||||||||||||||| |||||||||||| ||        |||| ||||||| |||||||||||||  | |||||||||||||      
T  10719909 cacatgaccaaataaaaagtgtttggtcacaaacacataaagaaatattttttttaatagtaaagagaaaattgataaaaaaaaatgattgaatatttta 10719810  T
Q  120 aggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||  || ||||||||||||| | |||||| |||| |||||||||| ||||||||||||||||    
T  10719809 aggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccatggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  176 gaagaatatctcc 188  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 34849604 - 34849451
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnn--aataataaagaggaaattgataaaaat-gatgattgaatattta 118  Q
    |||| |||||||||||||||||||||||||||||   |||| |||||         |||||||| ||| |||||||||||||  |||||||||||||||     
T  34849604 cacatgaccaaagaaaaagtgtttggtcacacacg--taaaaaagtatttttttttaataataaggagaaaattgataaaaaaagatgattgaatatttt 34849507  T
Q  119 gaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849506 gaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 42285325 - 42285218
Alignment:
Q  28 accaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaa 126  Q
    ||||||||||||||||||| ||||||||  |||||||  ||       |||||||| |||||||||||||||||  | ||||||||||||| ||||||||    
T  42285325 accaaagaaaaagtgtttgatcacacacgtataaagagctatttttttaataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaa 42285226  T
Q  127 tcttttta 134  Q
    ||||||||    
T  42285225 tcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  146 aaacattattgatttggtcttgtgaccatggaagaatatct 186  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  78 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 172  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  173 atggaagaatatctcctt 190  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 16778299 - 16778130
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatga---tgattgaatattta 118  Q
    |||||||||||| |||||||| ||||||| ||||||||||| || ||       |||||||| | | |||||||||||||  |   |||||||||||||     
T  16778299 cacaggaccaaataaaaagtgcttggtcatacacacataaaaaaata-ttttttaataataaggtgaaaattgataaaaaaaaaagtgattgaatatttt 16778201  T
Q  119 gaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcc 188  Q
     | ||||||||||| | |||||||   |||||| | || ||||| || |||||||||||||||||| ||||    
T  16778200 aatgagaatcttttatgtgtgtgtgaccaaacacttttcatttgatcctgtgaccatggaagaatacctcc 16778130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 16778149 - 16778189
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaa 62  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  16778149 cacaggatcaaatgaaaagtgtttggtcacacacacataaa 16778189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 35521 - 35362
Alignment:
Q  30 caaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatc 128  Q
    |||||||||||||||||||||||| || | ||| || ||       ||||||||  | ||||||||||||||  ||||||||||||||| ||||||||||    
T  35521 caaagaaaaagtgtttggtcacacgcataaaaaaaa-tatttttttaataataagaaagaaattgataaaaaaagatgattgaatattttgaggagaatc 35423  T
Q  129 tttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatatctc 187  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  35422 tttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatatctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 7080316 - 7080148
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagtannnnnnnaataataaagaggaaattgataaaaatgatgattgaatatttagag 121  Q
    |||| ||||||| | ||| | |||||||||||| | |||||||||||       |||| |||||| |||||||||||||| ||| ||||||||||| ||     
T  7080316 cacatgaccaaaaagaaactatttggtcacacatagataaagaagtatttttttaatattaaagacgaaattgataaaaaagattattgaatattttgaa 7080217  T
Q  122 gagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcc 188  Q
    ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||| |||||||| ||||    
T  7080216 gagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  89 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 994910 - 994864
Alignment:
Q  22 cacaggaccaaagaaaaagtgtttggtcacacacacataaagaagta 68  Q
    |||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  994910 cacaagaccaaataaatagtgtttggtcacacacacataaacaagta 994864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 26606240 - 26606207
Alignment:
Q  35 aaaaagtgtttggtcacacacacataaagaagta 68  Q
    |||||||||||||||||||||||||||| |||||    
T  26606240 aaaaagtgtttggtcacacacacataaacaagta 26606207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 17999 - 18042
Alignment:
Q  26 ggaccaaagaaaa-agtgtttggtcacacacacataaagaagta 68  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  17999 ggaccaaagaaaaaagtgtttggtcacacacacataaagaagta 18042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 191  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 57 - 165
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  156 tggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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