View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_214 (Length: 227)
Name: NF6819A_low_214
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_214 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 34571157 - 34570948
Alignment:
| Q |
18 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctnnnnnnnttgtttcaatttgaatgtttatttacttatattctgtat |
117 |
Q |
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| T |
34571157 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctaaaaaaattgtttcaatttgaatgtttctttacttatattctgtat |
34571058 |
T |
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| Q |
118 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571057 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
34570958 |
T |
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| Q |
218 |
gaccaggatg |
227 |
Q |
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| T |
34570957 |
gaccaggatg |
34570948 |
T |
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