View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_22 (Length: 421)
Name: NF6819A_low_22
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_22 |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 11842072 - 11842480
Alignment:
| Q |
1 |
aatgtttgccctctgatacagctcttcttgatgagttctcggtttctactcatcaccgtaagttaaaggaaataatattggtgttatggaaacctcccta |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11842072 |
aatgtttgccctctgatacaactcttcttgatgagttctcggtttctactcatcaccataagttaaaggaaataatattggtgttatggaaacctcccta |
11842171 |
T |
|
| Q |
101 |
ctctccttggctcaaagttaataacgatggttcagttattggcgggttggcggcttgtggc--ggt--------ctttttcgggattctttaggtgctta |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||| ||||||||||| |||| |
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| T |
11842172 |
ctctccttggctcaaagttaataacgatggttcagttattggcaggttggcggcttgtgtctcggtgtcttttcctttttcggaattctttaggtactta |
11842271 |
T |
|
| Q |
191 |
tctcggtgccttttcttgcaacattggtatgagttcggtgtttcatgctgaaattttggcttttattcttgcaatggagcatgttgcccatcatgggtgg |
290 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11842272 |
tctcggtgtcttttcctgcaacattggtatgagttcggtgtttcatgctgaaattttggcttttattcttgcaatggagcatgttgcccatcatgggtgg |
11842371 |
T |
|
| Q |
291 |
agaaatatatggttggagagtgattgattccactattgcactgataacctttgcgaatccttcgttagtccctttattgcttcggaacagatggcataac |
390 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |
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| T |
11842372 |
agaaatatatggttggagag----tgattccactattgcactgatgacctttgcgaatccttcgttggtccctttgttgctttggaacagatggcataac |
11842467 |
T |
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| Q |
391 |
gctcgtggacttg |
403 |
Q |
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||||||||||||| |
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| T |
11842468 |
gctcgtggacttg |
11842480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 15827079 - 15827239
Alignment:
| Q |
102 |
tctccttggctcaaagttaataacgatggttcagttattggcgggttggcggcttgtggcggtctttttcgggattctttaggtgcttatctcggtgcct |
201 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| || || ||||||||||| || || ||| |||| |||||||| |||| |||||||||| |
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| T |
15827079 |
tctccttggctgaaagttaatacagatggttcagttattggtggtttagcggcttgtgggggactcttttgggactctttaggcgctttcctcggtgcct |
15827178 |
T |
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| Q |
202 |
tttcttgcaacattggtatgagttcggtgtttcatgctgaaattttggcttttattcttgc |
262 |
Q |
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| T |
15827179 |
tctcttgcaacattggtattgcttcggtttttcacgcggaaactcttgcttttattcttgc |
15827239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 13068 - 13356
Alignment:
| Q |
25 |
ttcttgatgagttctcggtttctactcatcaccgtaagttaaaggaaataatattggtgttatggaaacctccctactctccttggctcaaagttaataa |
124 |
Q |
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||||||| || ||||||||||| ||| ||||||||| | ||||| || || |||||||||||||| ||| | | |||||| ||| |||||||||| |
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| T |
13068 |
ttcttgaggaattctcggtttcacctcgtcaccgtaaatacaaggacattattttggtgttatggaagaatccttcccctcctttgctgaaagttaatac |
13167 |
T |
|
| Q |
125 |
cgatggttcagttattggcgggttggcggcttgtggcggtctttttcgggattctttaggtgcttatctcggtgccttttcttgcaacattggtatgagt |
224 |
Q |
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| T |
13168 |
agatggttcagtcgttggtgggttagcggcttgtgggggtctttttagggactcttcaggttcattcctcggtgcattctcttgcaacataggcctggcc |
13267 |
T |
|
| Q |
225 |
tcggtgtttcatgctgaaattttggcttttattcttgcaatggagcatgttgcccatcatgggtggagaaatatatggttggagagtga |
313 |
Q |
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||||| |||||||| |||| | | |||||||| ||||| | ||||||| || |||||||| ||||| || | ||| |||||||||| |
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| T |
13268 |
tcggtttttcatgcggaaactcttgcttttatccttgctctagagcatgcggcacatcatggatggaggaacctttggctggagagtga |
13356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 19741383 - 19741673
Alignment:
| Q |
25 |
ttcttgatgagttctcggtttctactcatcaccgtaagttaaaggaaataatattggtgttatggaaacctccctactctccttggctcaaagttaataa |
124 |
Q |
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||||||| || |||| |||||| || ||||||||||| || || ||||| || |||||| | |||||| |||||| || |||||||| |||||||||| |
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| T |
19741383 |
ttcttgacgatttcttggtttccacccatcaccgtaaattcaaagaaattattttggtgctttggaaatctccctcatccccttggctgaaagttaatac |
19741482 |
T |
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| Q |
125 |
cgatggttcagttattggcgggttggcggcttgtggcggtctttttcgggattctttaggtgcttatctcggtgccttttcttgcaacattggtatgagt |
224 |
Q |
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| T |
19741483 |
ggatggttcagttattggtcactccgcggcttgtgggggcctgtttagggactctctaggcacgttcctcggtgctttctcttgtaacataggtatcgcc |
19741582 |
T |
|
| Q |
225 |
tcggtgtttcatgctgaaattttggcttttattcttgcaatggagcatgttgcccatcatgggtggagaaatatatggttggagagtgatt |
315 |
Q |
| |
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||||| ||||||| ||||| | | |||| ||| ||||| || || || | || || ||||||||||||||| | |||||||| ||||||| |
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| T |
19741583 |
tcggtttttcatgttgaaactctagcttatatccttgctatagaacacgcagctcagcatgggtggagaaatctgtggttggaaagtgatt |
19741673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 24069210 - 24069351
Alignment:
| Q |
1 |
aatgtttgccctctgatacagctcttcttgatgagttctcggtttctactcatcaccgtaagttaaaggaaataatattggtgttatggaaacctcccta |
100 |
Q |
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|||||||||| ||||| | ||| ||||||| || ||| |||||| || |||||||| || || || ||||| || |||||| | |||||| |||||| |
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| T |
24069210 |
aatgtttgccatctgactcggcttttcttgacgatttcatggtttccacccatcaccgcaaattcaaagaaattattttggtgctttggaaatctccctc |
24069309 |
T |
|
| Q |
101 |
ctctccttggctcaaagttaataacgatggttcagttattgg |
142 |
Q |
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|| |||||||| |||||||||| ||||||||||||||||| |
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| T |
24069310 |
atccccttggctaaaagttaatacagatggttcagttattgg |
24069351 |
T |
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