View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_220 (Length: 225)
Name: NF6819A_low_220
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_220 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31745326 - 31745102
Alignment:
| Q |
1 |
aattaccatttttagtattttttaataaattattgaatctcattctcttactataaaatactccctccgatcctttttataaaaagacatttaaatcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
31745326 |
aattaccatttttagtattttttaataaattattgaatcttattctcttactataaaatactccatccggtcctttttataaaaagacatttaaatcaat |
31745227 |
T |
|
| Q |
101 |
aaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtctattattttg |
200 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31745226 |
aaaagttgatgtatctagttaaataattggaccagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtatattattttg |
31745127 |
T |
|
| Q |
201 |
gtaattggtatagactcttttttga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31745126 |
gtaattggtatagactcttttttga |
31745102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 10069229 - 10069312
Alignment:
| Q |
82 |
aaaagacatttaaatcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatattt |
165 |
Q |
| |
|
||||||||||| | |||| ||||||| ||| |||| |||||| ||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
10069229 |
aaaagacatttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaatattt |
10069312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 32045211 - 32045160
Alignment:
| Q |
59 |
tactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatg |
111 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
32045211 |
tactccctccgatcctatttataaaa-gatatttaactcaacaaaagttaatg |
32045160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 9213512 - 9213572
Alignment:
| Q |
55 |
aaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatct |
116 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||| | |||||||||||| ||| |||| |
|
|
| T |
9213512 |
aaaatactccctccggtcctatttat-aaaagacattttagtcaacaaaagttgatgtatct |
9213572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University