View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_224 (Length: 224)
Name: NF6819A_low_224
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_224 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 3586866 - 3586707
Alignment:
| Q |
64 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctgtaaacaaataaaaaat |
163 |
Q |
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| T |
3586866 |
tacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
3586767 |
T |
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| Q |
164 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgt |
224 |
Q |
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| T |
3586766 |
gcgggaa-agttaagataaacatgtagaaaatgcgggaacagttaagaagaataagcatgt |
3586707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 9789599 - 9789750
Alignment:
| Q |
64 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctgtaaacaaataaaaaat |
163 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | || |||||||||||| |
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| T |
9789599 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaagatatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaat |
9789698 |
T |
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| Q |
164 |
gcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaa |
215 |
Q |
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| T |
9789699 |
gcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagaa |
9789750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 44504713 - 44504580
Alignment:
| Q |
71 |
agatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctgtaaacaaataaaaaatgcgggaa |
170 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||| |
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| T |
44504713 |
agatctgaaaagtctgacaacagcagcagctaagttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaa |
44504614 |
T |
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| Q |
171 |
tagttaagataagcatgtagaaaatgcaggaaca |
204 |
Q |
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| T |
44504613 |
cagttgagataaacatgtagaaaatgcgggaaca |
44504580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 31678598 - 31678518
Alignment:
| Q |
64 |
tacctgcagatctgagaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatat |
144 |
Q |
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| T |
31678598 |
tacctgtagatctgaaaagtctgacaacagcagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatat |
31678518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 31678441 - 31678377
Alignment:
| Q |
160 |
aaatgcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgt |
224 |
Q |
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| T |
31678441 |
aaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagcataagcatgt |
31678377 |
T |
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