View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_226 (Length: 223)

Name: NF6819A_low_226

Description: NF6819A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6819A_low_226

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 25 - 202

Target Start/End: Complemental strand, 31998088 - 31997911

Alignment:

Q	25	aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta	124	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31998088	aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta	31997989	T

Q	125	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaactccacatccacggggcat	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|
T	31997988	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcat	31997911	T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 117 - 196

Target Start/End: Complemental strand, 15843120 - 15843041

Alignment:

Q	117	agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaactccacatccacg	196	Q
		\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	15843120	agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacg	15843041	T

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