View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_228 (Length: 222)
Name: NF6819A_low_228
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_228 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 30769797 - 30769617
Alignment:
| Q |
21 |
ttggagttaaactaaaaacatacaagtgcaagaggcaaggtatcaaatatatatgtatgcgtttgtggggctaaaacaatcaaaaaatctttcatctttt |
120 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769797 |
ttggagttaaactaaaaacatataattgcaagaggcaaggtatcaaatatatatgtatgcgtttgtggggctaaaacaatcaaaaaatctttcatctttt |
30769698 |
T |
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| Q |
121 |
ctctgactagactctggcatacttttgcagaagcatccacgatcaagccaaggtacctttaccctcccacacccatgtgat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769697 |
ctctgactagactctggcatacttttgcagaagcatccacgatcaagccaaggtacctttaccctcccacacccatgtgat |
30769617 |
T |
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