View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_233 (Length: 221)
Name: NF6819A_low_233
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_233 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43875771 - 43875991
Alignment:
| Q |
1 |
aagtaattgatatcaatcacaagatcccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtcccaatctttcccttaatccac |
100 |
Q |
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| T |
43875771 |
aagtaattgatatcaatcacaagataccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtcccaatctttcccttaatccac |
43875870 |
T |
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| Q |
101 |
tagccaactcagcaatcaaactctgaggtggcatttcagccatatcaacaacatcaccatcaacaccttcctcatagttttgagcactcaaatttgacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43875871 |
tagccaactcagcaatcaaactctgaggtggcatttcagccatatcaacagcatcaccatcaacaccttcctcatagttttgagcactcaaatttgacac |
43875970 |
T |
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| Q |
201 |
ttgagaaaacggcaccgaccc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43875971 |
ttgagaaaacggcaccgaccc |
43875991 |
T |
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