View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6819A_low_234 (Length: 221)

Name: NF6819A_low_234

Description: NF6819A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6819A_low_234

[»] chr5 (5 HSPs)

[»] chr7 (1 HSPs)

Alignment Details

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 196; E-Value: 1e-107

Query Start/End: Original strand, 22 - 221

Target Start/End: Complemental strand, 18029249 - 18029050

Alignment:

Q	22	ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029249	ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac	18029150	T

Q	122	atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttgggcagctcagagatggccaattcttctccatgttcttcattaggtc	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029149	atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtc	18029050	T

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Target: chr5; HSP #2

Raw Score: 60; E-Value: 9e-26

Query Start/End: Original strand, 22 - 197

Target Start/End: Complemental strand, 18035046 - 18034871

Alignment:

Q	22	ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\| \|\| \|\| \| \|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|
T	18035046	ttgttacctgcattcttaaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctgaac	18034947	T

Q	122	atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttgggcagctcagagatggccaatt	197	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	18034946	aggtaccatgtttcatccattcatgtgaccaaagtctaataccatttccactagggcagctcaaagatggccaatt	18034871	T

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Target: chr5; HSP #3

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 70 - 152

Target Start/End: Complemental strand, 18047695 - 18047613

Alignment:

Q	70	agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca	152	Q
		\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18047695	agtttgagagccgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgacca	18047613	T

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Target: chr5; HSP #4

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 70 - 152

Target Start/End: Complemental strand, 18052678 - 18052596

Alignment:

Q	70	agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca	152	Q
		\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18052678	agtttgagagctgtttgaaagtagtcatgttgagaaagcttagattctgaacatgtgccatgtttcatccattcatgtgacca	18052596	T

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Target: chr5; HSP #5

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 82 - 156

Target Start/End: Complemental strand, 17999728 - 17999654

Alignment:

Q	82	gtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgaccagaat	156	Q
		\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\| \| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	17999728	gtttcaaaataatcatgttgcttaagaactgattctgaacaagtaccatgtttctcccattcatgtgtccagaat	17999654	T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 64; E-Value: 4e-28

Query Start/End: Original strand, 126 - 221

Target Start/End: Complemental strand, 3616899 - 3616804

Alignment:

Q	126	accatgtttctcccattcatgtgaccagaatctaaaaccattgctacttgggcagctcagagatggccaattcttctccatgttcttcattaggtc	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	3616899	accatgtttctcccattcatgtgactagaatctaaaacaattgctgcttggacagctcaaagatggtcaattcttctacatgttcttaattaggtc	3616804	T

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