View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_235 (Length: 220)
Name: NF6819A_low_235
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_235 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19506155 - 19505935
Alignment:
| Q |
1 |
ttaaaaagtgtgacgtttaaccaaaaatcatattaatannnnnnn-aggtatttaaatatatgaagaccaaaagtgtaataatatcaactaataatatat |
99 |
Q |
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| T |
19506155 |
ttaaaaggtgtgacgtttaaccaaaaatcatattaatattttttttaggtatttaaatatatgaagaccaaaagtgtaataatatcaactaataatatat |
19506056 |
T |
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| Q |
100 |
aatatttcatttccgtttaatgaagataaattgtaaaatccttctcaccacatcaaaaactgcctctaagtctgcaaggaagcatgttaattttccttta |
199 |
Q |
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| T |
19506055 |
aatatttcatttccgtttaaagaagataaattgtaaaatccttctcaccacatcaaaaactgcctctaagtctgcaaggaagcatgttaattttccttta |
19505956 |
T |
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| Q |
200 |
ccataagcaacaattaaactg |
220 |
Q |
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| T |
19505955 |
ccataagcaacaattaaactg |
19505935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 19482426 - 19482380
Alignment:
| Q |
174 |
caaggaagcatgttaattttcctttaccataagcaacaattaaactg |
220 |
Q |
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| T |
19482426 |
caaggaagcatgttaattttcctttcccataagctacagctaaactg |
19482380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 36182235 - 36182267
Alignment:
| Q |
178 |
gaagcatgttaattttcctttaccataagcaac |
210 |
Q |
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| T |
36182235 |
gaagcttgttaattttcctttaccataagcaac |
36182267 |
T |
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