View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_240 (Length: 218)
Name: NF6819A_low_240
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_240 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (7 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0064 (2 HSPs) |
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| [»] scaffold0039 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 19482703 - 19482904
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19482703 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcatttta |
19482802 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19482803 |
aacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacattccaagt |
19482902 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
19482903 |
ga |
19482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 25475408 - 25475607
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25475408 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaa--tttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcatttta |
25475505 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25475506 |
aacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacattccaagt |
25475605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 9817871 - 9818072
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9817871 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcatttta |
9817970 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
9817971 |
aacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacattccaagt |
9818070 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
9818071 |
ga |
9818072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 14581553 - 14581501
Alignment:
| Q |
28 |
aagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattct |
80 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14581553 |
aagttagcacaaacaacacaaattgcataaacaaaatttatgcataaaattct |
14581501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 21840591 - 21840390
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21840591 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcatttta |
21840492 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21840491 |
agcaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacattccaagt |
21840392 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
21840391 |
ga |
21840390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 18452014 - 18451813
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18452014 |
ataaattacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacatgcatttta |
18451915 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
18451914 |
aacaattcagccaaacaacataatcataagttcgcacaactctaatttagacccaacatacgcaagttaacaatttcagacacttgcctacattccaagt |
18451815 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
18451814 |
ga |
18451813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 19097744 - 19097945
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
19097744 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatctgactttggacacgcatttta |
19097843 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19097844 |
aacaattcagccaaacaacataatcataagttcgcacagctctaatttagacccaacatatgcaagttaacaatttcagacacttgcctacattccaagt |
19097943 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
19097944 |
ga |
19097945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 25404407 - 25404608
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25404407 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacgcatttta |
25404506 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25404507 |
aacaattaagccaaacaacataatcataagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacattccaagt |
25404606 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
25404607 |
ga |
25404608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 25408983 - 25409184
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25408983 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacgcatttta |
25409082 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25409083 |
aacaattaagccaaacaacataatcataagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacattccaagt |
25409182 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
25409183 |
ga |
25409184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 24952799 - 24952601
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||| || |||| | |||| ||| |
|
|
| T |
24952799 |
ataaatcacaaattcgcacaaacaccccaaattgtagaaacaaaatttatgcataaaattctgcaacacaatcaaaatccaacattgggtacgcatctta |
24952700 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaag |
215 |
Q |
| |
|
||||||||| ||||||||| |||||| || || ||||| |||||||||||||| ||| || |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
24952699 |
aacaattcagccaaacaacgtaatcacaaatttgcacaactctaatttagaccatacacacgtaagttaacaatttcagacacttgcctacattccaag |
24952601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 25404652 - 25404786
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || | |||| ||| || ||| ||| |||||||||| | | ||| ||||||||||||| ||||||| |
|
|
| T |
25404652 |
aaacaaaatatatgcataaaattcaacaacataaagagaatctgaccctgcacacacatcttaaacaattaagcaaaataacataatcataaattcgcac |
25404751 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaaca |
190 |
Q |
| |
|
|||||||||| |||||| ||| || ||| |||||| |
|
|
| T |
25404752 |
agctctaattcagaccctacacacgcaacttaaca |
25404786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 25409228 - 25409362
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || | |||| ||| || ||| ||| |||||||||| | | ||| ||||||||||||| ||||||| |
|
|
| T |
25409228 |
aaacaaaatatatgcataaaattcaacaacataaagagaatctgaccctgcacacacatcttaaacaattaagcaaaataacataatcataaattcgcac |
25409327 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaaca |
190 |
Q |
| |
|
|||||||||| |||||| ||| || ||| |||||| |
|
|
| T |
25409328 |
agctctaattcagaccctacacacgcaacttaaca |
25409362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 24952557 - 24952454
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||| || | |||||||| || |||||||| || ||| ||| |||||||||||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
24952557 |
aaacaaaatatatgcataaagttttgcaacacaaacagaatccgaccctgcacacacatcttaaacaattcagccaaa-aacgtaatcataaattcgcac |
24952459 |
T |
|
| Q |
156 |
agctc |
160 |
Q |
| |
|
||||| |
|
|
| T |
24952458 |
agctc |
24952454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 20144280 - 20144480
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
20144280 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttgg-cacgcatttta |
20144378 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
20144379 |
aacaattcagccaaacaacataatcataagttcgcacagctctaaattaaacccagcatacgcaagttaacaatttcagacacttgcctacattccaagt |
20144478 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
20144479 |
ga |
20144480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 3539884 - 3540088
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaa---attgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
3539884 |
ataaatcacaagtttgcacaaacaccacaacaaattgcagaaacaaaatttatgcataaaattctgcaacacaatcaaaatccgactttggacacgcatc |
3539983 |
T |
|
| Q |
116 |
ttaaacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattcca |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| || |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
3539984 |
ttaaacaattcagccaaacaacataatcataagttcgcacaactctaattcagacccaacacacgcaagttcacaatttcaggcacttgcctacattcca |
3540083 |
T |
|
| Q |
214 |
agtga |
218 |
Q |
| |
|
||||| |
|
|
| T |
3540084 |
agtga |
3540088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 3540129 - 3540293
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||||||| || ||| ||| |||||||||||| | |||||||||||||||| ||| ||| |
|
|
| T |
3540129 |
aaacaaaatatatgcataaaattctacaacacaaacataatccgaccctgcacacacatcttaaacaattcagcataacaacataatcataaattcacac |
3540228 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagtga |
218 |
Q |
| |
|
| || ||||| |||||| ||| || ||| | ||| |||||| |||| |||||||||||||||| |
|
|
| T |
3540229 |
aactttaattcagaccctacacacgcaactaaactgtttcaggcacttgcctacattccaagtga |
3540293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 20144524 - 20144658
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || | |||| ||| || ||| ||| |||||||||| | | ||| ||||||||||||| ||||||| |
|
|
| T |
20144524 |
aaacaaaatatatgcataaaattcaacaacataaagagaatctgaccctgcacacacatcttaaacaattaagcaaaataacataatcataaattcgcac |
20144623 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaaca |
190 |
Q |
| |
|
|||||||||| |||||| ||| || ||| |||||| |
|
|
| T |
20144624 |
agctctaattcagaccctacacacgcaacttaaca |
20144658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 21232171 - 21231970
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21232171 |
ataaatcacaagtttgcacaaacaccacaaattgcataaccaaaatttagacataaaattctgcaacacaatcaaaatccgactttggacacgcatttta |
21232072 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttc--agactttcctacattccaagt |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
21232071 |
aacaattcagccaaacaacataatcataagttcgcaaagctctaatttaaacccaacatacgcaagttaacaatttcaaacacttgtctacattccaagt |
21231972 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
21231971 |
ga |
21231970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 21231738 - 21231574
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||| ||| || ||| ||| |||||||||| | | ||||||||||||||||| || |||| |
|
|
| T |
21231738 |
aaacaaaatatatgcataaaattctacaacacaaacagaatctgaccctgcacacacatcttaaacaattaagcaaaacaacataatcataaatttgcac |
21231639 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagtga |
218 |
Q |
| |
|
|||||||||| |||||| ||| | ||| |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
21231638 |
agctctaattcagaccctacacaagcaacttaacagtttcaggcacttgcctacattccaagtga |
21231574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 21231863 - 21231781
Alignment:
| Q |
138 |
ataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagtga |
218 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||| ||| || ||| |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
21231863 |
ataatcataaattcgcacagttctaattcagaccctacacacgcaacttaacagtttcaggcacttgcctacattccaagtga |
21231781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 21231927 - 21231894
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaa |
89 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
21231927 |
aaacaaaatatatgcataaaattctacaacacaa |
21231894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 15229 - 15032
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
15229 |
ataaatcaaaagttcgcacaaacaccacaaattgcaaaaacaaaatttatgcataaaattttgcaacacaatcaaaatccgaccttggacacgcatctta |
15130 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
15129 |
aacaattcagccaaacagcataatcataagttcacacaactctaatttagaccc----tacacaagttaacaatttcaggcacttgcctatattccaagt |
15034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 14991 - 14825
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| ||||||||| ||| | |||||||| || |||||||| || ||| ||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
14991 |
aaacaaaatatatgcataatattttgcaacacaaacagaatccgaccctgaacagacatcttaaacaattcagccaaacaacataatcataaaatcgcat |
14892 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaacaatttca----gactttcctacattccaagtga |
218 |
Q |
| |
|
||||| |||| | |||| ||| || ||| |||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
14891 |
agctcgaattcaaaccctacacacgcaacttaacagtttcatagggacttgcctacattccaagtga |
14825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 86711 - 86514
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||| || |||| |||| ||| |
|
|
| T |
86711 |
ataaatcacaagttcgcacaaacaccacaaattgcagaaacaaaatttatgcataaaattttgcaacacaataaaaatccgacctttgacacgcatctta |
86612 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttca--gactttcctacattccaagt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
86611 |
aacaattcagccaaacaacataatcataagttcatacaactctaattcagaccc----tacacaaggtaacaatttcatgcacttgcctacattccaagt |
86516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 86473 - 86309
Alignment:
| Q |
56 |
aaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcattttaaacaattcatccaaacaacataatcataagttcgcac |
155 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| || |||||||| ||| ||| |||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
86473 |
aaacaaaatatatgcataaaattttgcaacacaaacagaatccgaccttgcacacacattttaaacaattcagccaaacaacataatcataaaatcgcac |
86374 |
T |
|
| Q |
156 |
agctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagtga |
218 |
Q |
| |
|
||||| |||| | |||| | | || ||| ||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
86373 |
agctcgaattcaaaccctaaacacgcaacttaacaatttcaggcacttgcctacattccgagtga |
86309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 18404754 - 18404553
Alignment:
| Q |
19 |
ataaatcacaagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattctacaacacaatcaaaatccgactttggacatgcatttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||| || ||| ||| ||| |
|
|
| T |
18404754 |
ataaatcacaagtttgcacaaacaccacaaattgcagaaacaaaatatatgcataaaattctacaacacaaacagaatccgaccctgcacacacatctta |
18404655 |
T |
|
| Q |
119 |
aacaattcatccaaacaacataatcataagttcgcacagctctaatttagacccaacatacacaagttaacaatttcag--actttcctacattccaagt |
216 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| || ||||| |||||| ||| | ||| | |||| |||||| |||| |||||||||||||| |
|
|
| T |
18404654 |
aacaattcagcaaaacaacataatcataaattcgcacaactttaattcagaccctacacatgcaactaaacagtttcaggcacttgcctacattccaagt |
18404555 |
T |
|
| Q |
217 |
ga |
218 |
Q |
| |
|
|| |
|
|
| T |
18404554 |
ga |
18404553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 235822 - 235874
Alignment:
| Q |
28 |
aagtttgcacaaacaccacaaattgcataaacaaaatttatgcataaaattct |
80 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
235822 |
aagttagcacaaacaacacaaattgcataaacaaaatttatgcataaaattct |
235874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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