View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_244 (Length: 215)
Name: NF6819A_low_244
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_244 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 48192341 - 48192520
Alignment:
| Q |
16 |
tctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgcttc |
115 |
Q |
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| T |
48192341 |
tctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgcttc |
48192440 |
T |
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| Q |
116 |
agtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
195 |
Q |
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| T |
48192441 |
agtgaaatatgcagcaattctctgcatagtgtcttcatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
48192520 |
T |
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Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 2086438 - 2086617
Alignment:
| Q |
16 |
tctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgcttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||| |
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| T |
2086438 |
tctgaaccataatttcttcagaaagcataataattcttgtggaatttaaggctctatggagtcctggccaggttttgagtatcctatcagcaagtgcttc |
2086537 |
T |
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| Q |
116 |
agtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2086538 |
agtgaaatatgcagcaattctctgcatagtgtctccatcaggagttgcaagctgagaaatctgttcaagtgttgtgtttg |
2086617 |
T |
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