View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6819A_low_245 (Length: 214)
Name: NF6819A_low_245
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_245 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 2888287 - 2888461
Alignment:
| Q |
19 |
aatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2888287 |
aatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactcg |
2888386 |
T |
|
| Q |
119 |
agttctaacctcttttgttgatttccagctcaaatagacaagacctgtttaatgccctcggttcgatgtatactg |
193 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2888387 |
agttctaacctcttttgttcatttccagctcaaagagacaagacctgtttaatgccctcggttcgatgtatactg |
2888461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 2896067 - 2895912
Alignment:
| Q |
32 |
cttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactcaagttctaacctct |
131 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||| ||| | |||||||||||||| | | |||| ||| |
|
|
| T |
2896067 |
cttggaaggaaatagtaagtgaaacttcattatgtgaaaaataagaaata-----ttatagtta-gtccgattttctttccaacttgaatgttaacttct |
2895974 |
T |
|
| Q |
132 |
tttgttgatttccagctcaaatagacaagacctgtttaatgccctcggttcgatgtatactg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2895973 |
tttgttgatttccagctcaaatagacaagatctgtttaatgccctcggttcgatgtatactg |
2895912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University