View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_258 (Length: 208)
Name: NF6819A_low_258
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_258 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 41387147 - 41386973
Alignment:
| Q |
16 |
tatcatagaccagtggctgaatatcctccgcgtctgccattgtctttcaaaatctgcacaaaccatacattccttctcactgcattgaaagacaacacca |
115 |
Q |
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| T |
41387147 |
tatcacagaccagtggctgaatatcctcggcgtctgccattgtctttcaaaatctgcacaaaccatacattccttctcagtgcattgaaagacaacacca |
41387048 |
T |
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| Q |
116 |
agtgcaattccaaacaattt---tnnnnnnnncatgttaaattttctcaccattacttattacatctatttctac |
187 |
Q |
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| T |
41387047 |
agtgcaattccaaacaatttaaaaaaaaaaaacatcttaaattttctcaccattacttattacatctatttctac |
41386973 |
T |
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