View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_28 (Length: 404)
Name: NF6819A_low_28
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_28 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 35742726 - 35743114
Alignment:
| Q |
11 |
atgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattttataagttactggatcttcgagatcttcgagatcctcgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35742726 |
atgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattctataagttactggatcttcgagatcttcgagatcctcgt |
35742825 |
T |
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| Q |
111 |
actcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttcgacaaaatactagtcccaactaggtctttgat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35742826 |
actcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgat |
35742925 |
T |
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| Q |
211 |
gtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataagtgaactacaa |
310 |
Q |
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| T |
35742926 |
gtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataagtgaactacaa |
35743025 |
T |
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| Q |
311 |
attcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgcaacacaagaaatatcagaagagtcaatgcaaaatct |
399 |
Q |
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| T |
35743026 |
attcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgcaacacaagaaatatcagaagagtcaatgcaaaatct |
35743114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 339
Target Start/End: Original strand, 35749175 - 35749425
Alignment:
| Q |
98 |
tcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttcgacaaaatactagtcccaa |
197 |
Q |
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| T |
35749175 |
tcgagatccttgtactcgtcaaaatagtcttcaccaaaccaaagttgtggggctgaagttcacatatacctccaattttttgacaaaatactagtcctaa |
35749274 |
T |
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| Q |
198 |
ctaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat----------cctcttgatcgg |
287 |
Q |
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| T |
35749275 |
ctaggtctttgatgtacaagcgtgctaggatatcatcaataacattacatggtaagtcactgattcgatcaatgtgatcatgattggccttcttg-ttag |
35749373 |
T |
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| Q |
288 |
aaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac |
339 |
Q |
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| T |
35749374 |
acagagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac |
35749425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 35739703 - 35739741
Alignment:
| Q |
224 |
aggatgccgtcaatgacattgcatggtaagtcactgatt |
262 |
Q |
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| T |
35739703 |
aggatgccgtcaatggcattgcatggtaagtcactgatt |
35739741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 40011146 - 40011283
Alignment:
| Q |
139 |
aagtcgtggggctttagtccacttatacctccactgtttcgacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatg |
238 |
Q |
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| T |
40011146 |
aagtcgtgggactgtaatccacatatacctccactttctagacagaacactagtcctcactaggtctcgggcgttcaagtgttctaggatgccatcgatg |
40011245 |
T |
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| Q |
239 |
acattgcatggtaagtcactgattcgatcaatttgatc |
276 |
Q |
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| T |
40011246 |
acattacttggtaagtcactgattcgatcaatgtgatc |
40011283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 10862327 - 10862282
Alignment:
| Q |
224 |
aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaa |
269 |
Q |
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| T |
10862327 |
aggatgccatcaatgacattacatggtaagtcactaattcaatcaa |
10862282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 3681 - 3733
Alignment:
| Q |
224 |
aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatc |
276 |
Q |
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| T |
3681 |
aggatgccatcaatgacattacatggtaagtcactgattcgatcaatgtgatc |
3733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 320
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
| Q |
290 |
agagtcataagtgaactacaaattcaagcaa |
320 |
Q |
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| T |
16865311 |
agagtcataagtgaactacaaattcaagcaa |
16865281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 16865386 - 16865344
Alignment:
| Q |
227 |
atgccgtcaatgacattgcatggtaagtcactgattcgatcaa |
269 |
Q |
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| T |
16865386 |
atgccatcaatgacattacttggtaagtcactgattcgatcaa |
16865344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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