View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_29 (Length: 402)
Name: NF6819A_low_29
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 43831145 - 43831529
Alignment:
| Q |
13 |
attctttaggtttaaatataaacggagaaatggttacatctcataaaatttatttgtgaatgtattcttttccatttatgttagagccaggatcgatccg |
112 |
Q |
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| T |
43831145 |
attctttaggtttaaatataaacagagaaatggttacatctcataaaatttatttgtgaatgtattcttttccatttatgttagagccaggatcgatccg |
43831244 |
T |
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| Q |
113 |
tttccgagcaaggaatatggcgctatattcagtaaaggcaggagcacttggttttcctattggtaactttattataagtagttttctttgctaatcacta |
212 |
Q |
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| T |
43831245 |
ttcccgagcaaggaatatggcgctatattcagtaaaggcaggagcacttggttttcctattggtaactttattataagtagttttctttgctaatcacta |
43831344 |
T |
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| Q |
213 |
atataggagaaagtcctgttatgagaagaatggannnnnnnagtgaccaatttagtnnnnnnntcaatgtgattatctctctcgtaacacgatttttctc |
312 |
Q |
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| T |
43831345 |
atataggagaaagtcctgttatgagaagaatggatttttttagtgaccaatttagtaaaaaaatcaatgtgattatctctctcgtaacacgatttttctc |
43831444 |
T |
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| Q |
313 |
tcttattagtaaattaaaagagaggatttaaaatctttattcatgggtttaactgatttgtgcatcatggagatatgtggttgtt |
397 |
Q |
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| T |
43831445 |
tcttattagtaaattaaaagagaggatttaaaatctttattcatgggtttaactgatttgtgcatcatggagatatgtggttgtt |
43831529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 43825873 - 43826095
Alignment:
| Q |
14 |
ttctttaggtttaaatataaacggagaaatggttacatctcataaaatttatttgtgaatgtattcttttccatttatgttagagccaggatcgatccgt |
113 |
Q |
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||||||||| | ||||||||| ||| ||||| |||||| |||||||||| ||||| |||||||| |||||| |||||||||| |||||||||| ||||| |
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| T |
43825873 |
ttctttaggctgaaatataaagggaaaaatgtttacatgtcataaaattactttgttaatgtattgttttccctttatgttagtgccaggatcgttccgt |
43825972 |
T |
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| Q |
114 |
ttccgagcaaggaatatggcgctatattcagtaaaggcaggagcacttggttttcctattggtaactttattat-aagtagttttctttgctaatcacta |
212 |
Q |
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| ||||||||||||||||| ||| |||||| || || |||| || |||||||| | |||| || || | |||| || |||||||||||||||| |
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| T |
43825973 |
tggcgagcaaggaatatggcactaggatcagtactgggagcagcattttgttttcctctgggta--ttatttctcgagtatttgtctttgctaatcacta |
43826070 |
T |
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| Q |
213 |
atataggagaaagtcctgttatgagaa |
239 |
Q |
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| T |
43826071 |
--ataggagaaagtcctgttatgagaa |
43826095 |
T |
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Back To:
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