View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_32 (Length: 390)
Name: NF6819A_low_32
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_32 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 46844888 - 46844530
Alignment:
| Q |
8 |
agcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggt |
107 |
Q |
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| T |
46844888 |
agcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggt |
46844789 |
T |
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| Q |
108 |
ggaattatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggca |
207 |
Q |
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| T |
46844788 |
ggaattatgtcacatactcaatcatccttagcttccaatttaggcatctt--gtgctatataggcatcacgtcctccaacaacatcctctggtcacggca |
46844691 |
T |
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| Q |
208 |
ttcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgttcta |
307 |
Q |
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| T |
46844690 |
ttcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcggtcta |
46844591 |
T |
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| Q |
308 |
attctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacgg |
368 |
Q |
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| T |
46844590 |
attctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacgg |
46844530 |
T |
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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
179 |
tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
236 |
Q |
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| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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