View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_35 (Length: 382)
Name: NF6819A_low_35
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 51 - 370
Target Start/End: Original strand, 2523841 - 2524159
Alignment:
| Q |
51 |
ggctcttaaaatctctacaaattactgcatgcagttgcaccaatatattatgctgacctagctgctgctcagatagcacaatttataaaatatgatgagt |
150 |
Q |
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| T |
2523841 |
ggctcttaaaatctctacaaattactgcatgcagttgcaccaatatattatgctgacctagctgctgctcagatagcacaatttataaaatatgatgagt |
2523940 |
T |
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| Q |
151 |
cagagaatctttccggccacaatgaattcatatctcaaatacctactgagttaccacgtcttcatgaacgagttgcagattctatgttcttctgttaatg |
250 |
Q |
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| T |
2523941 |
cagagaatctttccagccacaatgaattcatatctcaaatacctactgagttaccacgtcttcatgaacgagttgcagattctatgttcttctgttaatg |
2524040 |
T |
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| Q |
251 |
attctctttcattgaaactcatgagttgaaatgtcaaatgtatgtttattttatcattgtatatcgttgtattcaatgttattaaatatattacgatcaa |
350 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2524041 |
attctctttcattcaaactcatgagttg-aatgtcaaatgtatgtttattttatcattgtatatcgttgttgtcaatgttattaaatatagtacgatcaa |
2524139 |
T |
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| Q |
351 |
ataaaagtttgacttatatt |
370 |
Q |
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|||||||||||||||||||| |
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| T |
2524140 |
ataaaagtttgacttatatt |
2524159 |
T |
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