View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6819A_low_39 (Length: 374)
Name: NF6819A_low_39
Description: NF6819A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6819A_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 38936009 - 38936377
Alignment:
| Q |
1 |
ggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaatcgcgtcacatagtttgtgt |
100 |
Q |
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| T |
38936009 |
ggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaaccgcgtcacctagtttgtgt |
38936108 |
T |
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| Q |
101 |
gtttctgtgacggagaaggtgttgaaacttctagaaactgtgtcgtcgacgaaggaggggaggtcggagacatgtgaagcgccgtcatgtgtggcggcga |
200 |
Q |
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| T |
38936109 |
gtttctgtgacggagaaggtgttgaaacttctagaaacggtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggtggcga |
38936208 |
T |
|
| Q |
201 |
tagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaaga |
300 |
Q |
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| T |
38936209 |
tagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaaga |
38936308 |
T |
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| Q |
301 |
agctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
369 |
Q |
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| T |
38936309 |
agctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 369
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
233 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
332 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
333 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
369 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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